Non-Coding RNA Search

Ss1.1-rjca13c_m5.5

Sequence:


               
               CTGGTGGCAGCGCTGGGCACGTCCGGGCCGCAATTCCTGGCCTACTTCGGCTCCTTCGTC
ACGGTGGGCCTGCTCTGGTTCGCCCACCACTCACTCTTCCTGCACATCCGCAAGGTCACG
CGGCCCATGGGGCTTCTCAACACGCTGTCGCTGGCCTTCGTGGGCGGCCTGCCCCTGGCC
TACCAGCAGACCTCGGCCTTCGAGAAGCAGTCCCCCAGAGAGCTGGAGAGCGTGCGAGTT
AGCTGCGCCATCATCTTCTTCGCCAGCATCTTCCAGTTTGCCATCTGGACCACCGCGCTG
CTGCAGGAGGGGGAGACACTGCAGCCCTCGGCCCGGTTTGGGGGCCGGGAGCACGCGTTC
ATGTTCGCCAAGCTCGCGCTGTACCCCTGCGCCAGCCTGCTGGCCTTCGCCTCCACCTGC
ATCCTGAGCAGGTTCAGCACAGCCATCTTCCACATCATGCAGATCGCCGTGCCCTTCGCC
TTCCTGCTGCTGCGGCTCTTGGTGCGCCTGGCGCTGGCCGCCCTGCGTGCCCTGCGGGGC
CTCACCCGGCCAGGACGCACCCAGCCGGCACCCAGGGCCATGGACGATGCGCGGGCCCCG
CTCCTCCCTGCGCCCTGCTAGTGCCAGGCCCTGGCCCCCAGCCCAAGGTTGGCTCTCAAC
TCCTCTTGTGAGGCCTCATGTTCGACCCCAGAGCCCTCAGCGTGTTTCCGCTTTTGCAGA
GAAAGCCTCCTGGGAGCTTCAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTGGCAGCGCTGGGCACGTCCGGGCCGCAATTCCTGGCCTACTTCGGCTCCTTCGTC
ACGGTGGGCCTGCTCTGGTTCGCCCACCACTCACTCTTCCTGCACATCCGCAAGGTCACG
CGGCCCATGGGGCTTCTCAACACGCTGTCGCTGGCCTTCGTGGGCGGCCTGCCCCTGGCC
TACCAGCAGACCTCGGCCTTCGAGAAGCAGTCCCCCAGAGAGCTGGAGAGCGTGCGAGTT
AGCTGCGCCATCATCTTCTTCGCCAGCATCTTCCAGTTTGCCATCTGGACCACCGCGCTG
CTGCAGGAGGGGGAGACACTGCAGCCCTCGGCCCGGTTTGGGGGCCGGGAGCACGCGTTC
ATGTTCGCCAAGCTCGCGCTGTACCCCTGCGCCAGCCTGCTGGCCTTCGCCTCCACCTGC
ATCCTGAGCAGGTTCAGCACAGCCATCTTCCACATCATGCAGATCGCCGTGCCCTTCGCC
TTCCTGCTGCTGCGGCTCTTGGTGCGCCTGGCGCTGGCCGCCCTGCGTGCCCTGCGGGGC
CTCACCCGGCCAGGACGCACCCAGCCGGCACCCAGGGCCATGGACGATGCGCGGGCCCCG
CTCCTCCCTGCGCCCTGCTAGTGCCAGGCCCTGGCCCCCAGCCCAAGGTTGGCTCTCAAC
TCCTCTTGTGAGGCCTCATGTTCGACCCCAGAGCCCTCAGCGTGTTTCCGCTTTTGCAGA
GAAAGCCTCCTGGGAGCTTCAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8ND13_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8ND13_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-159, - strand, RNAz p=0.630537
               

               
               320-519, - strand, RNAz p=0.801124

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.630537
               

               
               320-519, - strand, RNAz p=0.801124

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-741, gnl|bosTau2|chr6 (63587344-63586618)
               

               
               1-741, gnl|canFam2|chr3 (94388537-94387927)
               

               
               1-741, gnl|danRer3|chr5 (35745248-35745824)
               

               
               1-741, gnl|echTel1|scaffold_164751 (423-1045)
               

               
               1-741, gnl|fr1|chrUn (174210882-174210264)
               

               
               1-741, gnl|galGal2|chrZ (25364145-25364748)
               

               
               1-741, gnl|hg17|chr4 (941423-942047)
               

               
               1-741, gnl|Hg17|chr4 (941494-942319)
               

               
               1-741, gnl|loxAfr1|scaffold_36724 (15601-14958)
               

               
               1-741, gnl|mm7|chr5 (107826752-107827373)
               

               
               1-741, gnl|Mm7|chr5 (107826823-107827441)
               

               
               1-741, gnl|monDom2|scaffold_10 (49420803-49420202)
               

               
               1-741, gnl|panTro1|chr3 (1021368-1021992)
               

               
               1-741, gnl|rheMac2|chr1 (3003045-3002421)
               

               
               1-741, gnl|rn3|chr14 (1615382-1614761)
               

               
               1-741, gnl|tetNig1|chr12 (3536168-3536777)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-741, gnl|bosTau2|chr6 (63587344-63586618)
               

               
               1-741, gnl|canFam2|chr3 (94388537-94387927)
               

               
               1-741, gnl|danRer3|chr5 (35745248-35745824)
               

               
               1-741, gnl|echTel1|scaffold_164751 (423-1045)
               

               
               1-741, gnl|fr1|chrUn (174210882-174210264)
               

               
               1-741, gnl|galGal2|chrZ (25364145-25364748)
               

               
               1-741, gnl|hg17|chr4 (941423-942047)
               

               
               1-741, gnl|Hg17|chr4 (941494-942319)
               

               
               1-741, gnl|loxAfr1|scaffold_36724 (15601-14958)
               

               
               1-741, gnl|mm7|chr5 (107826752-107827373)
               

               
               1-741, gnl|Mm7|chr5 (107826823-107827441)
               

               
               1-741, gnl|monDom2|scaffold_10 (49420803-49420202)
               

               
               1-741, gnl|panTro1|chr3 (1021368-1021992)
               

               
               1-741, gnl|rheMac2|chr1 (3003045-3002421)
               

               
               1-741, gnl|rn3|chr14 (1615382-1614761)
               

               
               1-741, gnl|tetNig1|chr12 (3536168-3536777)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	1-159, - strand, RNAz p=0.630537
	320-519, - strand, RNAz p=0.801124

	1-741, gnl\|bosTau2\|chr6 (63587344-63586618)
	1-741, gnl\|canFam2\|chr3 (94388537-94387927)
	1-741, gnl\|danRer3\|chr5 (35745248-35745824)
	1-741, gnl\|echTel1\|scaffold_164751 (423-1045)
	1-741, gnl\|fr1\|chrUn (174210882-174210264)
	1-741, gnl\|galGal2\|chrZ (25364145-25364748)
	1-741, gnl\|hg17\|chr4 (941423-942047)
	1-741, gnl\|Hg17\|chr4 (941494-942319)
	1-741, gnl\|loxAfr1\|scaffold_36724 (15601-14958)
	1-741, gnl\|mm7\|chr5 (107826752-107827373)
	1-741, gnl\|Mm7\|chr5 (107826823-107827441)
	1-741, gnl\|monDom2\|scaffold_10 (49420803-49420202)
	1-741, gnl\|panTro1\|chr3 (1021368-1021992)
	1-741, gnl\|rheMac2\|chr1 (3003045-3002421)
	1-741, gnl\|rn3\|chr14 (1615382-1614761)
	1-741, gnl\|tetNig1\|chr12 (3536168-3536777)