Non-Coding RNA Search

Ss1.1-rjca13c_p2.5

Sequence:


               
               AGGGAACCGCTATTCGGATGATTAGCTGCCCCAGCTGGGTCTCTGCACGTGGGGAAGGGG
CCCCTCCTGCCTGCACCCTGCTCCTTGGCTTGGGCTCCTGGAACAAGACTGCAGGGGGGA
CAGGACAGAAAGCCCTGGGGGTGGGAGGAGGGATAGGGGCCTCCCCTGCTGAGGGGCAAG
GTGCCCCACCACATCCACATGGGGAAGGATGCAGGGCCTGGACCTGGCGGGAAAAGAGGC
CATGTTGAGGCCCTTCTCTGCTATCCTGGGAGCTCTCCAGCCTGCAAGGCATCCCCAGGG
GCTGAGGCTGCAGTGGCTGGGTTTTGTGCTTATTTATTGGGGGGTGGGTTGGGGAGCAGC
TGTCTGGACTTGAGGGCACCCTGGCCTGACCATCTTTCGGGACACATTTTGGTCAAGGCT
ATGATGCTAAGCCCAGAGGCCCCTCTGCTGCCTGCTACCCTTGGTCTTTGGGCACCAGGA
ACCGCGTGGGTCCCACTGCCAGTCCAGCTAGGCTTCCTGCCGGGGCCTGGCTGGGACCAG
AGGCCTTAGAAACCATCTAGTCCTGTGTTTCTCAGTGGGGCTACAGGTTGCTGACCAGGA
TACTTGAAGCCACAGGATAAATGTGGTACATCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGAACCGCTATTCGGATGATTAGCTGCCCCAGCTGGGTCTCTGCACGTGGGGAAGGGG
CCCCTCCTGCCTGCACCCTGCTCCTTGGCTTGGGCTCCTGGAACAAGACTGCAGGGGGGA
CAGGACAGAAAGCCCTGGGGGTGGGAGGAGGGATAGGGGCCTCCCCTGCTGAGGGGCAAG
GTGCCCCACCACATCCACATGGGGAAGGATGCAGGGCCTGGACCTGGCGGGAAAAGAGGC
CATGTTGAGGCCCTTCTCTGCTATCCTGGGAGCTCTCCAGCCTGCAAGGCATCCCCAGGG
GCTGAGGCTGCAGTGGCTGGGTTTTGTGCTTATTTATTGGGGGGTGGGTTGGGGAGCAGC
TGTCTGGACTTGAGGGCACCCTGGCCTGACCATCTTTCGGGACACATTTTGGTCAAGGCT
ATGATGCTAAGCCCAGAGGCCCCTCTGCTGCCTGCTACCCTTGGTCTTTGGGCACCAGGA
ACCGCGTGGGTCCCACTGCCAGTCCAGCTAGGCTTCCTGCCGGGGCCTGGCTGGGACCAG
AGGCCTTAGAAACCATCTAGTCCTGTGTTTCTCAGTGGGGCTACAGGTTGCTGACCAGGA
TACTTGAAGCCACAGGATAAATGTGGTACATCTTCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               98-198, - strand, RNAz p=0.560323
               

               
               378-636, + strand, RNAz p=0.99992

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-198, - strand, RNAz p=0.560323
               

               
               378-636, + strand, RNAz p=0.99992

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_001017981, -
               

               
               5' of NM_001017981, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001017981, -
               

               
               5' of NM_001017981, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-209, gnl|bosTau2|chr17 (42576567-42576368)
               

               
               1-209, gnl|canFam2|chr26 (26550727-26551163)
               

               
               1-209, gnl|dasNov1|scaffold_43134 (3961-4390)
               

               
               1-209, gnl|echTel1|scaffold_323760 (38838-38485)
               

               
               1-209, gnl|hg17|chr22 (29099688-29100111)
               

               
               1-209, gnl|Hg17|chr22 (29100167-29099976)
               

               
               1-209, gnl|loxAfr1|scaffold_39669 (734-1167)
               

               
               1-209, gnl|mm7|chr11 (4092877-4092548)
               

               
               1-209, gnl|panTro1|chr23 (29194644-29195067)
               

               
               1-209, gnl|rheMac2|chr10 (74229674-74230095)
               

               
               1-209, gnl|rn3|chr14 (84785999-84785678)
               


               
               266-636, gnl|bosTau2|chr17 (42576189-42575817)
               

               
               266-636, gnl|Hg17|chr22 (29099803-29099457)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-209, gnl|bosTau2|chr17 (42576567-42576368)
               

               
               1-209, gnl|canFam2|chr26 (26550727-26551163)
               

               
               1-209, gnl|dasNov1|scaffold_43134 (3961-4390)
               

               
               1-209, gnl|echTel1|scaffold_323760 (38838-38485)
               

               
               1-209, gnl|hg17|chr22 (29099688-29100111)
               

               
               1-209, gnl|Hg17|chr22 (29100167-29099976)
               

               
               1-209, gnl|loxAfr1|scaffold_39669 (734-1167)
               

               
               1-209, gnl|mm7|chr11 (4092877-4092548)
               

               
               1-209, gnl|panTro1|chr23 (29194644-29195067)
               

               
               1-209, gnl|rheMac2|chr10 (74229674-74230095)
               

               
               1-209, gnl|rn3|chr14 (84785999-84785678)
               


               
               266-636, gnl|bosTau2|chr17 (42576189-42575817)
               

               
               266-636, gnl|Hg17|chr22 (29099803-29099457)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               amn (0.417711)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               jca (0.11396)

	98-198, - strand, RNAz p=0.560323
	378-636, + strand, RNAz p=0.99992

	1-209, gnl\|bosTau2\|chr17 (42576567-42576368)
	1-209, gnl\|canFam2\|chr26 (26550727-26551163)
	1-209, gnl\|dasNov1\|scaffold_43134 (3961-4390)
	1-209, gnl\|echTel1\|scaffold_323760 (38838-38485)
	1-209, gnl\|hg17\|chr22 (29099688-29100111)
	1-209, gnl\|Hg17\|chr22 (29100167-29099976)
	1-209, gnl\|loxAfr1\|scaffold_39669 (734-1167)
	1-209, gnl\|mm7\|chr11 (4092877-4092548)
	1-209, gnl\|panTro1\|chr23 (29194644-29195067)
	1-209, gnl\|rheMac2\|chr10 (74229674-74230095)
	1-209, gnl\|rn3\|chr14 (84785999-84785678)

	266-636, gnl\|bosTau2\|chr17 (42576189-42575817)
	266-636, gnl\|Hg17\|chr22 (29099803-29099457)