Non-Coding RNA Search

Ss1.1-rjca14c_b4.5

Sequence:


               
               TCCAGAGCCACGGTGGCCATGGCCAGCGAGGAGCTGGCGAGCAAGCTGCAGCGGCGACTG
CAGTGGGAGGAGATGGAGGAAGGCGGCCCCCAGCCTGAGCCCCGAGCCGCCCCAGTCCCG
GAGCCCCAGCCGCAGCCACCCGCCCGGGCGCCCATCGCCAGAGCCGACGCCGAGCTGAGC
GTGCAGCTGAACCGACGGCTGGACATCAACGAGGGCGCGGCGCGGCCCCGCCGCTGCAAG
GTCTTCCACCCCTACTCCGAGTTCCCGGAGTTCAGCCGCCGCCTCATCAAGGACCTGGAG
AGCATGTTCAAACTATACGATGCTGGTCGGGATGGCTACATTGACCTGATGGAGCTGAAG
CTGATGATGGAGAAGCTGGGCGCCCCCCAGACCCACCTGGGCCTGAAGAGCATGATCAAG
GAGGTGGACGAGGACTTTGATGGCAAACTCAGCTTCCGTGAGTTCCTGCTCATATTCCAC
AAGGCTGCAGCGGGGGAACTGCAGGAAGACAGCGGGCTGATGGTGCTGGCAAAGCTTTCC
GAGATCGACGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGAGCCACGGTGGCCATGGCCAGCGAGGAGCTGGCGAGCAAGCTGCAGCGGCGACTG
CAGTGGGAGGAGATGGAGGAAGGCGGCCCCCAGCCTGAGCCCCGAGCCGCCCCAGTCCCG
GAGCCCCAGCCGCAGCCACCCGCCCGGGCGCCCATCGCCAGAGCCGACGCCGAGCTGAGC
GTGCAGCTGAACCGACGGCTGGACATCAACGAGGGCGCGGCGCGGCCCCGCCGCTGCAAG
GTCTTCCACCCCTACTCCGAGTTCCCGGAGTTCAGCCGCCGCCTCATCAAGGACCTGGAG
AGCATGTTCAAACTATACGATGCTGGTCGGGATGGCTACATTGACCTGATGGAGCTGAAG
CTGATGATGGAGAAGCTGGGCGCCCCCCAGACCCACCTGGGCCTGAAGAGCATGATCAAG
GAGGTGGACGAGGACTTTGATGGCAAACTCAGCTTCCGTGAGTTCCTGCTCATATTCCAC
AAGGCTGCAGCGGGGGAACTGCAGGAAGACAGCGGGCTGATGGTGCTGGCAAAGCTTTCC
GAGATCGACGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61876328|ref|XP_592081.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61876328|ref|XP_592081.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               316-462, gnl|bosTau2|chr16 (38701827-38701973)
               

               
               316-462, gnl|Hg17|chr1 (15497674-15497820)
               

               
               316-462, gnl|Mm7|chr4 (141240392-141240246)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               316-462, gnl|bosTau2|chr16 (38701827-38701973)
               

               
               316-462, gnl|Hg17|chr1 (15497674-15497820)
               

               
               316-462, gnl|Mm7|chr4 (141240392-141240246)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.341297)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               jca (0.11396)

	316-462, gnl\|bosTau2\|chr16 (38701827-38701973)
	316-462, gnl\|Hg17\|chr1 (15497674-15497820)
	316-462, gnl\|Mm7\|chr4 (141240392-141240246)