Ss1.1-rjca14c_p10.5
|
CCGCCCCCCATTTCCAAGAAGCCCAAACTGTTCCTCGTGGTGCCACCTCCGCAGAGAGAT
TTCACGGCGGAGCCTGCAGAGAATAAGAGCGAAGCATTGCCCAGCCCCACGAGAGAAGAG
GCACGAGAGAGTTGTATAGCCGAGGCTGGTTCCGATGATACCAACTCTGGCAGCTCGGTT
CTTGCAGGAGGAGCTACAGGATCCAAGTCCGCCGACGGAGTGGAATCCAATGTCCCCATG
GTACAGCCCGATGCCTCACCAGCCCTTGCGCAGGAGGAGCCAGGCACAGGGGACACCGTG
GAGAGCTGTTCCTCCCTGCAGGACCCAAGACCTGGGGTGCCGGAGGCTGACACAGCCAGC
CCTTCGCCAGAGGCCTCTGACTTCCTTAAGGAAGACGGGAGTGATGAGGTGATGATCCCC
AGTAGACCCCGGACCACGGAAGACCTTTTTGCAGCTATTCACAGGTCTAAGAGGAAAGTC
CTTGGCCGCAAAGACTCAGATGATGATCACTCCCGAAACCATTCTCCCTCCCCGCCAGTG
ACACCCACTGGCGCTGCCCCCAGCCTGGCCTCCCAGAAACAAGTGGGATCGATTCAGAGG
AGCGTCCGGAAGAGCAGCACCAGCAGTGACAACTTCAAAGCTCTTCTGCTGAAAAAGGGG
AGCCGGACAGACACCAGCGCCCGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGCCCCCCATTTCCAAGAAGCCCAAACTGTTCCTCGTGGTGCCACCTCCGCAGAGAGAT
TTCACGGCGGAGCCTGCAGAGAATAAGAGCGAAGCATTGCCCAGCCCCACGAGAGAAGAG
GCACGAGAGAGTTGTATAGCCGAGGCTGGTTCCGATGATACCAACTCTGGCAGCTCGGTT
CTTGCAGGAGGAGCTACAGGATCCAAGTCCGCCGACGGAGTGGAATCCAATGTCCCCATG
GTACAGCCCGATGCCTCACCAGCCCTTGCGCAGGAGGAGCCAGGCACAGGGGACACCGTG
GAGAGCTGTTCCTCCCTGCAGGACCCAAGACCTGGGGTGCCGGAGGCTGACACAGCCAGC
CCTTCGCCAGAGGCCTCTGACTTCCTTAAGGAAGACGGGAGTGATGAGGTGATGATCCCC
AGTAGACCCCGGACCACGGAAGACCTTTTTGCAGCTATTCACAGGTCTAAGAGGAAAGTC
CTTGGCCGCAAAGACTCAGATGATGATCACTCCCGAAACCATTCTCCCTCCCCGCCAGTG
ACACCCACTGGCGCTGCCCCCAGCCTGGCCTCCCAGAAACAAGTGGGATCGATTCAGAGG
AGCGTCCGGAAGAGCAGCACCAGCAGTGACAACTTCAAAGCTCTTCTGCTGAAAAAGGGG
AGCCGGACAGACACCAGCGCCCGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
529-645, - strand, RNAmicro p=0.999986 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
529-645, - strand, RNAmicro p=0.999986 |
|
1-249, gnl|bosTau2|chr9 (44879948-44879696) |
|
1-249, gnl|Hg17|chr6 (138793601-138793304) |
|
1-249, gnl|Mm7|chr10 (18249731-18250034) |
| |
|
459-684, gnl|bosTau2|chr9 (44874685-44874460) |
|
459-684, gnl|canFam2|chr1 (33784086-33784413) |
|
459-684, gnl|danRer3|chr20 (34364420-34364762) |
|
459-684, gnl|dasNov1|scaffold_253830 (324-4) |
|
459-684, gnl|echTel1|scaffold_228318 (3679-3352) |
|
459-684, gnl|fr1|chrUn (53267027-53266664) |
|
459-684, gnl|galGal2|chr3 (53295080-53294753) |
|
459-684, gnl|hg17|chr6 (138787322-138787649) |
|
459-684, gnl|Hg17|chr6 (138787652-138787427) |
|
459-684, gnl|loxAfr1|scaffold_1578 (100921-100559) |
|
459-684, gnl|mm7|chr10 (18254667-18254340) |
|
459-684, gnl|Mm7|chr10 (18254335-18254560) |
|
459-684, gnl|monDom2|scaffold_0 (71299224-71298897) |
|
459-684, gnl|oryCun1|scaffold_193067 (31335-31662) |
|
459-684, gnl|panTro1|chr5 (141601587-141601914) |
|
459-684, gnl|rheMac2|chr4 (125418705-125418378) |
|
459-684, gnl|rn3|chr1 (13619921-13619594) |
|
459-684, gnl|tetNig1|chr14 (4853442-4853805) |
|
459-684, gnl|xenTro1|scaffold_435 (236676-237000) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-249, gnl|bosTau2|chr9 (44879948-44879696) |
|
1-249, gnl|Hg17|chr6 (138793601-138793304) |
|
1-249, gnl|Mm7|chr10 (18249731-18250034) |
| |
|
459-684, gnl|bosTau2|chr9 (44874685-44874460) |
|
459-684, gnl|canFam2|chr1 (33784086-33784413) |
|
459-684, gnl|danRer3|chr20 (34364420-34364762) |
|
459-684, gnl|dasNov1|scaffold_253830 (324-4) |
|
459-684, gnl|echTel1|scaffold_228318 (3679-3352) |
|
459-684, gnl|fr1|chrUn (53267027-53266664) |
|
459-684, gnl|galGal2|chr3 (53295080-53294753) |
|
459-684, gnl|hg17|chr6 (138787322-138787649) |
|
459-684, gnl|Hg17|chr6 (138787652-138787427) |
|
459-684, gnl|loxAfr1|scaffold_1578 (100921-100559) |
|
459-684, gnl|mm7|chr10 (18254667-18254340) |
|
459-684, gnl|Mm7|chr10 (18254335-18254560) |
|
459-684, gnl|monDom2|scaffold_0 (71299224-71298897) |
|
459-684, gnl|oryCun1|scaffold_193067 (31335-31662) |
|
459-684, gnl|panTro1|chr5 (141601587-141601914) |
|
459-684, gnl|rheMac2|chr4 (125418705-125418378) |
|
459-684, gnl|rn3|chr1 (13619921-13619594) |
|
459-684, gnl|tetNig1|chr14 (4853442-4853805) |
|
459-684, gnl|xenTro1|scaffold_435 (236676-237000) |
|
nco (0.161734) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nco (0.161734) |
|
jca (0.11396) |
|
cty (0.10408) |
