Non-Coding RNA Search

Ss1.1-rjca15c_l22.5

Sequence:


               
               TGTTCCCTGCCCATCTCATGCCTTGCGTTCCGCCTGTCCTTCCCCTCCCCCCGAGCCTGG
AACCCGCAGCCCTTTCTTCCCTGAGCTTCTACTCCAAGGCCCTGGCCTGGGACCTGATTC
TCCATCCTACACCAGGGTTCACGCCACTTCTTCTTGGTCTGTACCTGGCGGCCACCACTG
CCCACTCTGGTCAGCCAGGATGGATGGGGATGTTGGGTTCCTGGGGTTGGTCAGCTGGTG
CCAGGCTTTTGGTGCTAAGGCCTGTGAGGGGTCCCAGGCAGTGCTGCTTCCTCCTCTGAC
CCGGTTCGGGACCAGCTCTTTAGCAGTGAGGGGTCAGTCCACACGTGAGAACCGCCTTTG
ATCTGAAGGGCTGAATTCTGAGGTCACCTTCCTATCCCATCAGCCCCCAGACTGATGTTG
GCACCAGGATTGGAGGGAAGGCAATGCACCCCTTTCCTTTCTTTTGCTTTCCAGGCCCTT
AGGCCTGCCAAGCCCCAGATGGGGGTCTTTCAGTGCCATTGACACTGCCCAGGAATGTCC
AGAGGCAAAAGAGGGGGAGACAGACAAAGAGCCCAGCCCATCCTGCCTCCCCCATGGCCG
CAGGAGCCCCAGTGCCTATCTTAGAAAGGGGCTTGGGGAAGGGACACACTATTCCCCTCC
TTGTCCCTGGTCCAGCCTCACTGTAGGACCCAGGGCTGGCTTCTAAGTTTCCGTCCAGTC
TACAGCCAAGTTCTGTGTTAGTCACACACATGCCACACATATGAAACCTTGGAGTTTACA
CTGAGTTGTCCCAGCTCTGGTTCCCCTGGCCGCTCTGGGCCTTGGATCCCCTTCACCCGA
CCTGGTCTGTTCCAGATGCCAAGGGTGGGGGAGGTGAGGTCAGGCCTCTGCCTTGGGGAT
TGGGAATGTGTTTTATTCTCCCCACCTTGTTTTTATAGCTCTCCCTTGAGCTGGGGAAAG
GAGGAGGGTCTGATCTCTTTTCAGAGCTCCGTTTAATGTCTGTTCCCATGCTATGGTTGC
TCTGTTTTCTATGAATGAGTCTGCATTCAATTAAAAAAACAACCAGATGCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCCCTGCCCATCTCATGCCTTGCGTTCCGCCTGTCCTTCCCCTCCCCCCGAGCCTGG
AACCCGCAGCCCTTTCTTCCCTGAGCTTCTACTCCAAGGCCCTGGCCTGGGACCTGATTC
TCCATCCTACACCAGGGTTCACGCCACTTCTTCTTGGTCTGTACCTGGCGGCCACCACTG
CCCACTCTGGTCAGCCAGGATGGATGGGGATGTTGGGTTCCTGGGGTTGGTCAGCTGGTG
CCAGGCTTTTGGTGCTAAGGCCTGTGAGGGGTCCCAGGCAGTGCTGCTTCCTCCTCTGAC
CCGGTTCGGGACCAGCTCTTTAGCAGTGAGGGGTCAGTCCACACGTGAGAACCGCCTTTG
ATCTGAAGGGCTGAATTCTGAGGTCACCTTCCTATCCCATCAGCCCCCAGACTGATGTTG
GCACCAGGATTGGAGGGAAGGCAATGCACCCCTTTCCTTTCTTTTGCTTTCCAGGCCCTT
AGGCCTGCCAAGCCCCAGATGGGGGTCTTTCAGTGCCATTGACACTGCCCAGGAATGTCC
AGAGGCAAAAGAGGGGGAGACAGACAAAGAGCCCAGCCCATCCTGCCTCCCCCATGGCCG
CAGGAGCCCCAGTGCCTATCTTAGAAAGGGGCTTGGGGAAGGGACACACTATTCCCCTCC
TTGTCCCTGGTCCAGCCTCACTGTAGGACCCAGGGCTGGCTTCTAAGTTTCCGTCCAGTC
TACAGCCAAGTTCTGTGTTAGTCACACACATGCCACACATATGAAACCTTGGAGTTTACA
CTGAGTTGTCCCAGCTCTGGTTCCCCTGGCCGCTCTGGGCCTTGGATCCCCTTCACCCGA
CCTGGTCTGTTCCAGATGCCAAGGGTGGGGGAGGTGAGGTCAGGCCTCTGCCTTGGGGAT
TGGGAATGTGTTTTATTCTCCCCACCTTGTTTTTATAGCTCTCCCTTGAGCTGGGGAAAG
GAGGAGGGTCTGATCTCTTTTCAGAGCTCCGTTTAATGTCTGTTCCCATGCTATGGTTGC
TCTGTTTTCTATGAATGAGTCTGCATTCAATTAAAAAAACAACCAGATGCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               39-150, - strand, RNAz p=0.949104
               

               
               384-718, - strand, RNAz p=0.989318
               

               
               871-1071, + strand, RNAz p=0.802998

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-150, - strand, RNAz p=0.949104
               

               
               384-718, - strand, RNAz p=0.989318
               

               
               871-1071, + strand, RNAz p=0.802998

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               635-756, + strand, RNAmicro p=0.999873
               

               
               142-240, + strand, RNAmicro p=0.96127

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               635-756, + strand, RNAmicro p=0.999873
               

               
               142-240, + strand, RNAmicro p=0.96127

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK075471, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK075471, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1071, gnl|bosTau2|chr15 (9200142-9201206)
               

               
               2-1071, gnl|Hg17|chr11 (116572322-116573368)
               

               
               2-1071, gnl|Mm7|chr9 (45897026-45895999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1071, gnl|bosTau2|chr15 (9200142-9201206)
               

               
               2-1071, gnl|Hg17|chr11 (116572322-116573368)
               

               
               2-1071, gnl|Mm7|chr9 (45897026-45895999)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               pty (0.142714)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               pty (0.142714)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	39-150, - strand, RNAz p=0.949104
	384-718, - strand, RNAz p=0.989318
	871-1071, + strand, RNAz p=0.802998

	635-756, + strand, RNAmicro p=0.999873
	142-240, + strand, RNAmicro p=0.96127

	2-1071, gnl\|bosTau2\|chr15 (9200142-9201206)
	2-1071, gnl\|Hg17\|chr11 (116572322-116573368)
	2-1071, gnl\|Mm7\|chr9 (45897026-45895999)

	fcc (0.39557)
	fbs (0.350693)
	duo (0.345602)
	fhi (0.339155)
	fce (0.271592)
	pty (0.142714)
	med (0.116252)
	jca (0.11396)