Non-Coding RNA Search

Ss1.1-rjca15c_n4.5

Sequence:


               
               GGCAGCTGAGGGGGCACATGGGGAAATGTAGGAGTGTTTTCCACCTGCTGATTCCACCCA
GCATCCAGGCACCCGCCAAAGAGTGACTCTGCAGGGTGACGCCAGCGTTGGCCACCTCTG
GTTGTGCGGCCGTGCTGGGCCTCCACTGATGGCCAAGGGCTTTGGGCTGGAGGCTCTGGC
GGCCTAGGCTCTCTCTGTGCACGTGTGCGGGGGTCTCGCCAAGGTGAAGAGCCAGGTGGG
GTCTTCCACTTGGAGAGCTTCTCAAGAGGGTTGGCTCCTTAGATTCAAAATCAGCCTTAA
AATCTCCCCCTTTTCTGGAACCCGAGCCTCCTCTATGTTCACGGTGGCCCAGCAGAGCCA
CCGTTTTCCAAGACACAATTTCCCCTAGAAAGTTTCTTCCTCATCACTTGTAAATGCTTT
TCTGGGTGTCTAAAGAGCAGATTACAGTGGAAGGTAGAAGTGAGTTCGGTCCTTGATTTC
ATGTTGCTTCAAGGGGAGGTCTTGACATGCAGGCACAGAGGCTGCTTGGGGTAGGCAGGG
CGGTCTCAAGGACCTCGGTCCTGACTGACCTGGACAGGGAGGGGGTGACAACAGCAGTGT
GTGCTGAGTTAATGTTAACTTAACAGACCCGGACACAGCCCAAGAGGAAATGGAATAATT
GTTACAGTTCCACGTGCGGGTAAGATCCCTCAGGATCGCCATGGTTGGTCAACATACAGA
TGTGAAGCGAAAGGCCACTGAAATATGGGAAATACAGGCTGAGGAAAGGTCAGACTGTGA
TGACAGCATTAACAGTGTTTGTGAAAAGTGTGGGTGAGAAATTCCAACCTATTTTTGATA
CTGGAAACTCTTCCTTTAAAACTGTGAAGGTGAGAGCATTGAAGCCCCTTCCCCGCTTGC
CCCTCTCCTCCCTTTGTGCCTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCTGAGGGGGCACATGGGGAAATGTAGGAGTGTTTTCCACCTGCTGATTCCACCCA
GCATCCAGGCACCCGCCAAAGAGTGACTCTGCAGGGTGACGCCAGCGTTGGCCACCTCTG
GTTGTGCGGCCGTGCTGGGCCTCCACTGATGGCCAAGGGCTTTGGGCTGGAGGCTCTGGC
GGCCTAGGCTCTCTCTGTGCACGTGTGCGGGGGTCTCGCCAAGGTGAAGAGCCAGGTGGG
GTCTTCCACTTGGAGAGCTTCTCAAGAGGGTTGGCTCCTTAGATTCAAAATCAGCCTTAA
AATCTCCCCCTTTTCTGGAACCCGAGCCTCCTCTATGTTCACGGTGGCCCAGCAGAGCCA
CCGTTTTCCAAGACACAATTTCCCCTAGAAAGTTTCTTCCTCATCACTTGTAAATGCTTT
TCTGGGTGTCTAAAGAGCAGATTACAGTGGAAGGTAGAAGTGAGTTCGGTCCTTGATTTC
ATGTTGCTTCAAGGGGAGGTCTTGACATGCAGGCACAGAGGCTGCTTGGGGTAGGCAGGG
CGGTCTCAAGGACCTCGGTCCTGACTGACCTGGACAGGGAGGGGGTGACAACAGCAGTGT
GTGCTGAGTTAATGTTAACTTAACAGACCCGGACACAGCCCAAGAGGAAATGGAATAATT
GTTACAGTTCCACGTGCGGGTAAGATCCCTCAGGATCGCCATGGTTGGTCAACATACAGA
TGTGAAGCGAAAGGCCACTGAAATATGGGAAATACAGGCTGAGGAAAGGTCAGACTGTGA
TGACAGCATTAACAGTGTTTGTGAAAAGTGTGGGTGAGAAATTCCAACCTATTTTTGATA
CTGGAAACTCTTCCTTTAAAACTGTGAAGGTGAGAGCATTGAAGCCCCTTCCCCGCTTGC
CCCTCTCCTCCCTTTGTGCCTGCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               65-913, gnl|bosTau2|chr17 (24341447-24340579)
               

               
               65-913, gnl|Hg17|chr12 (130149219-130150055)
               

               
               65-913, gnl|Mm7|chr5 (128440852-128441623)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-913, gnl|bosTau2|chr17 (24341447-24340579)
               

               
               65-913, gnl|Hg17|chr12 (130149219-130150055)
               

               
               65-913, gnl|Mm7|chr5 (128440852-128441623)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               fty (0.17584)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               jca (0.11396)

	65-913, gnl\|bosTau2\|chr17 (24341447-24340579)
	65-913, gnl\|Hg17\|chr12 (130149219-130150055)
	65-913, gnl\|Mm7\|chr5 (128440852-128441623)