Ss1.1-rjca16c_l21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACAGCACAATGTTAGAATCTGACTTGGGGACCATGGTTATAAACAGCGAGGACGAGGAG GAGGAAGATGGAACTATGAAAAGAAACGCAACCTCACCACAAGTACAAAGACCGTCTTTC ATGGAGTACTTTGATAAACAGGACTTCAAGAATAAGAGTCATGAAAACTGTAGTCAGAAC ATGCATGAACCCTTCCCTGTGTCCAAAAATGTTTTCCCTGACAACTGGAAAGTTCCTCAA GATGGAGACTTTGACTTTTTAAAAAATCTAAGTTTAGAAGAACTACAGATGCGGTTAAAA GCGCTGGACCCCATGATGGAGCGAGAAATAGAAGAGCTCCGTCAGAGATACACTGCGAAA AGACAACCCATTCTGGATGCGATGGATGCCAAGAAAAGAAGGCAGCAGAACTTTTGAATC TAATTTCTCCTCTGTTTGTTTCTATGACTGTTCTGGAGACCAAGAAACCACTAAGAATTG AAGGGGTATTATGCTATCTTTTTCAATCTCTTAAGATCCGTGCTCTACAACCAGGCAGCA GTCAAAAACTGACGATGGTACAAACCCAGGTAAATTCCCCAAAGACAGAATTTAATACTG TATCCACTGTGTTTTCATTTTTTAAATAATGAAAACAGCAGAAATGGTGTTCTCTACATC TGTCAGCTGCATACCAGTACTAAAACTGTGTTTTAAAACGAAGGCTGTGTTTAGAAACCT TGAAAATCCAAAGCTGTTGTGTAATTGTACAGCACCGAAGGGCTTTATGTTACAGTATTC TTTATTCTTTTCTATTAGCCTATTTATTGTATCCCTTTAGGTAAACTTATTTATTTATGC TATTTCACCTTGTTTTGTTTTTTAAGGACAAGATCAGGATAGCTTTGGTGAAGGCAGGGA CTATTACTAGATGATAATGAACAACCCAATTATACTGTAAGCAGGGAGCTCTGGGGTACA TGCTTTCATTTCCAGGATAGTTTTCCAATAGAAGCAAAGCAATAATAGCAATAGTACCCA AAGGGCCCAGGCATTTTTTTATACAGAAGCAATAATTCCATTTTTACCTTCTGAAGTTTT AATTTTTTATTTTTGATGCTTGGTACAAATAAAACTATATATATTTAGGTCAGACAGAGC TGTAATGTTTAAAACCAAAGAAATCAATGGAACCCTTGCACAAAAAAGCATGGTAAATTT TTTAAAAGAAATAATTCCTTAAGACAAATGTAATTGTGAATATTGTTTCATGTGTAGGTC TCATAGCTAAACTGTATCAAATTGTAATAAGCTCATGACATTTTTTCTGTGAAAATGTGC TCAGTTGTCACCAGACATTTTTGTTGATTTCATTTATTTCCTGGGAATTGGTAAACATCA TGTGCCTGATGATAGCAAAATAGCAGAAACATTTGTACTGAACTGTGCAAGCCTTGGGGA CTGATAAAGATTAAAACTATTAAAAAGAAACTCATTTCTAAGCTGAATGAACATTTGCAT GATTGAACTGGGACCAGTCATTTTCCTAAGCTACATATGGCCATCTTGACAGCGTTTGTT CTTTTGTGTGTTTAATTACTACATGTAAATCATAAAGACAAATAAATTTTACTGTGCCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACAGCACAATGTTAGAATCTGACTTGGGGACCATGGTTATAAACAGCGAGGACGAGGAG GAGGAAGATGGAACTATGAAAAGAAACGCAACCTCACCACAAGTACAAAGACCGTCTTTC ATGGAGTACTTTGATAAACAGGACTTCAAGAATAAGAGTCATGAAAACTGTAGTCAGAAC ATGCATGAACCCTTCCCTGTGTCCAAAAATGTTTTCCCTGACAACTGGAAAGTTCCTCAA GATGGAGACTTTGACTTTTTAAAAAATCTAAGTTTAGAAGAACTACAGATGCGGTTAAAA GCGCTGGACCCCATGATGGAGCGAGAAATAGAAGAGCTCCGTCAGAGATACACTGCGAAA AGACAACCCATTCTGGATGCGATGGATGCCAAGAAAAGAAGGCAGCAGAACTTTTGAATC TAATTTCTCCTCTGTTTGTTTCTATGACTGTTCTGGAGACCAAGAAACCACTAAGAATTG AAGGGGTATTATGCTATCTTTTTCAATCTCTTAAGATCCGTGCTCTACAACCAGGCAGCA GTCAAAAACTGACGATGGTACAAACCCAGGTAAATTCCCCAAAGACAGAATTTAATACTG TATCCACTGTGTTTTCATTTTTTAAATAATGAAAACAGCAGAAATGGTGTTCTCTACATC TGTCAGCTGCATACCAGTACTAAAACTGTGTTTTAAAACGAAGGCTGTGTTTAGAAACCT TGAAAATCCAAAGCTGTTGTGTAATTGTACAGCACCGAAGGGCTTTATGTTACAGTATTC TTTATTCTTTTCTATTAGCCTATTTATTGTATCCCTTTAGGTAAACTTATTTATTTATGC TATTTCACCTTGTTTTGTTTTTTAAGGACAAGATCAGGATAGCTTTGGTGAAGGCAGGGA CTATTACTAGATGATAATGAACAACCCAATTATACTGTAAGCAGGGAGCTCTGGGGTACA TGCTTTCATTTCCAGGATAGTTTTCCAATAGAAGCAAAGCAATAATAGCAATAGTACCCA AAGGGCCCAGGCATTTTTTTATACAGAAGCAATAATTCCATTTTTACCTTCTGAAGTTTT AATTTTTTATTTTTGATGCTTGGTACAAATAAAACTATATATATTTAGGTCAGACAGAGC TGTAATGTTTAAAACCAAAGAAATCAATGGAACCCTTGCACAAAAAAGCATGGTAAATTT TTTAAAAGAAATAATTCCTTAAGACAAATGTAATTGTGAATATTGTTTCATGTGTAGGTC TCATAGCTAAACTGTATCAAATTGTAATAAGCTCATGACATTTTTTCTGTGAAAATGTGC TCAGTTGTCACCAGACATTTTTGTTGATTTCATTTATTTCCTGGGAATTGGTAAACATCA TGTGCCTGATGATAGCAAAATAGCAGAAACATTTGTACTGAACTGTGCAAGCCTTGGGGA CTGATAAAGATTAAAACTATTAAAAAGAAACTCATTTCTAAGCTGAATGAACATTTGCAT GATTGAACTGGGACCAGTCATTTTCCTAAGCTACATATGGCCATCTTGACAGCGTTTGTT CTTTTGTGTGTTTAATTACTACATGTAAATCATAAAGACAAATAAATTTTACTGTGCCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 578-694, - strand, RNAz p=0.848066 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 578-694, - strand, RNAz p=0.848066 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 259-1574, gnl|bosTau2|chr14 (40321747-40323068) | |
| 259-1574, gnl|Hg17|chr8 (99537404-99536089) | |
| 259-1574, gnl|Mm7|chr15 (34986146-34984875) | |
| 277-417, gnl|bosTau2|chr13 (55715901-55715761) | |
| 277-417, gnl|canFam2|chr24 (35436671-35436821) | |
| 277-417, gnl|danRer3|chr19 (49223644-49223784) | |
| 277-417, gnl|dasNov1|scaffold_42680 (7311-7461) | |
| 277-417, gnl|echTel1|scaffold_292254 (90272-90122) | |
| 277-417, gnl|fr1|chrUn (118542830-118542682) | |
| 277-417, gnl|galGal2|chr20 (4921960-4921810) | |
| 277-417, gnl|hg17|chr20 (43137083-43137233) | |
| 277-417, gnl|Hg17|chr20 (43137091-43137231) | |
| 277-417, gnl|loxAfr1|scaffold_5364 (49749-49599) | |
| 277-417, gnl|mm7|chr2 (163892573-163892722) | |
| 277-417, gnl|Mm7|chr2 (163892581-163892721) | |
| 277-417, gnl|monDom2|scaffold_1 (156637220-156637070) | |
| 277-417, gnl|oryCun1|scaffold_212081 (50505-50655) | |
| 277-417, gnl|panTro1|chr21 (45621354-45621504) | |
| 277-417, gnl|rheMac2|chr10 (19362765-19362615) | |
| 277-417, gnl|rn3|chr3 (154997448-154997597) | |
| 277-417, gnl|tetNig1|chr11 (11052188-11052338) | |
| 277-417, gnl|xenTro1|scaffold_329 (1053559-1053708) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 259-1574, gnl|bosTau2|chr14 (40321747-40323068) | |
| 259-1574, gnl|Hg17|chr8 (99537404-99536089) | |
| 259-1574, gnl|Mm7|chr15 (34986146-34984875) | |
| 277-417, gnl|bosTau2|chr13 (55715901-55715761) | |
| 277-417, gnl|canFam2|chr24 (35436671-35436821) | |
| 277-417, gnl|danRer3|chr19 (49223644-49223784) | |
| 277-417, gnl|dasNov1|scaffold_42680 (7311-7461) | |
| 277-417, gnl|echTel1|scaffold_292254 (90272-90122) | |
| 277-417, gnl|fr1|chrUn (118542830-118542682) | |
| 277-417, gnl|galGal2|chr20 (4921960-4921810) | |
| 277-417, gnl|hg17|chr20 (43137083-43137233) | |
| 277-417, gnl|Hg17|chr20 (43137091-43137231) | |
| 277-417, gnl|loxAfr1|scaffold_5364 (49749-49599) | |
| 277-417, gnl|mm7|chr2 (163892573-163892722) | |
| 277-417, gnl|Mm7|chr2 (163892581-163892721) | |
| 277-417, gnl|monDom2|scaffold_1 (156637220-156637070) | |
| 277-417, gnl|oryCun1|scaffold_212081 (50505-50655) | |
| 277-417, gnl|panTro1|chr21 (45621354-45621504) | |
| 277-417, gnl|rheMac2|chr10 (19362765-19362615) | |
| 277-417, gnl|rn3|chr3 (154997448-154997597) | |
| 277-417, gnl|tetNig1|chr11 (11052188-11052338) | |
| 277-417, gnl|xenTro1|scaffold_329 (1053559-1053708) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| mgp (0.461361) | |
| kid (0.389206) | |
| tra (0.369276) | |
| sug (0.254582) | |
| clu (0.239292) | |
| aor (0.195274) | |
| gul (0.177588) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ova (0.129132) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.461361) | |
| kid (0.389206) | |
| tra (0.369276) | |
| sug (0.254582) | |
| clu (0.239292) | |
| aor (0.195274) | |
| gul (0.177588) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ova (0.129132) | |
| eru (0.120048) | |
| jca (0.11396) |