Non-Coding RNA Search

Ss1.1-rjca17c_c10.5

Sequence:


               
               ACGCATTGCAGAGCTGGAAAAGACCTCAGCGGAACACAAACACCAGCTGGCGGAACAGGT
AGGGCATGTGCATGTACCCGCGTGCCTGTGGGTGAGAGGCATCAGCATGAGCAGTGGATC
TGTGCCTGTGCCTGCGAACCTGGGTCAGCGGGTCCTCTGCCTGTGTGTAGCAGCGAATCA
CCCTGGAGCTCTTCTTTCTTCCCTGCATCCCATCAGTGGCATTCAGCCACCTGATGTTTA
TCTTTATCAGATGCCTTCCCTTGAAGGCACTTTGCTAAGCACTAGAGATAGAGCTGGGGA
TGATACAGTCGTATCCCTGTCTTCATGAAGCTTCCTGTCTGGTTGTTCCTCAGATGTCTT
GATTTCCCTCTTTTTCACACATACATTTGTCTTTCATCTCTTGTCTGTCTTAACCATTAT
CCCTCATTCTCCTTCCTTCCACAGAAGCGGGACATCCAGCTACTCAAGGCATACATGCGT
GCAATCCGCAGTGTCAACCCCAACCTTCAGAACCTGGAGGAGACAATTGAGTACAACGAG
ATTCTAGAGTGAGTGTCGTTCAGGACGTGGAGTCACTCATCCATGTCCTGGCACCAAGCC
CTGAGTGGGGAAGAGCAGAGGGGAGGGTAAGAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCATTGCAGAGCTGGAAAAGACCTCAGCGGAACACAAACACCAGCTGGCGGAACAGGT
AGGGCATGTGCATGTACCCGCGTGCCTGTGGGTGAGAGGCATCAGCATGAGCAGTGGATC
TGTGCCTGTGCCTGCGAACCTGGGTCAGCGGGTCCTCTGCCTGTGTGTAGCAGCGAATCA
CCCTGGAGCTCTTCTTTCTTCCCTGCATCCCATCAGTGGCATTCAGCCACCTGATGTTTA
TCTTTATCAGATGCCTTCCCTTGAAGGCACTTTGCTAAGCACTAGAGATAGAGCTGGGGA
TGATACAGTCGTATCCCTGTCTTCATGAAGCTTCCTGTCTGGTTGTTCCTCAGATGTCTT
GATTTCCCTCTTTTTCACACATACATTTGTCTTTCATCTCTTGTCTGTCTTAACCATTAT
CCCTCATTCTCCTTCCTTCCACAGAAGCGGGACATCCAGCTACTCAAGGCATACATGCGT
GCAATCCGCAGTGTCAACCCCAACCTTCAGAACCTGGAGGAGACAATTGAGTACAACGAG
ATTCTAGAGTGAGTGTCGTTCAGGACGTGGAGTCACTCATCCATGTCCTGGCACCAAGCC
CTGAGTGGGGAAGAGCAGAGGGGAGGGTAAGAAGAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               207-364, - strand, RNAz p=0.986013
               

               
               484-635, + strand, RNAz p=0.991361

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-364, - strand, RNAz p=0.986013
               

               
               484-635, + strand, RNAz p=0.991361

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               243-364, 1240383 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286292.1|), 
blast E-value=2e-25, identity=87.7%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               243-364, 1240383 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286292.1|), 
blast E-value=2e-25, identity=87.7%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               207-635, gnl|bosTau2|chr5 (33424152-33424564)
               

               
               207-635, gnl|Hg17|chr12 (54888033-54887611)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-635, gnl|bosTau2|chr5 (33424152-33424564)
               

               
               207-635, gnl|Hg17|chr12 (54888033-54887611)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	207-364, - strand, RNAz p=0.986013
	484-635, + strand, RNAz p=0.991361

	207-635, gnl\|bosTau2\|chr5 (33424152-33424564)
	207-635, gnl\|Hg17\|chr12 (54888033-54887611)