Non-Coding RNA Search

Ss1.1-rjca17c_i19.5

Sequence:


               
               AAGGCCTATCCCGACTCCATGCCGCCTGGCTCTCCCTGCCTTCTGTGGCTCCTGGCTGTC
ACCTATTCCGTGGTTCCCGGAGTGCAGCCCTTGGCCGCGGGAGACTTGGAAGAAGAGCAA
GATGAGACACCTTTGCCAGCTGTGCTCTGTGACTACGACCGCTGCCGCCACTTGCAGGTG
CCCTGCCAGGAGCTGCAGAGGGCCAGCCCGACGGCCTGCCTGTGCCCCGGCCTCTCCAGC
GCCTCGCAGCCGCCCAACCCGCCGCGCCTGGGGGAAGTGCGCGTGGAAGCCGAGGAGGGC
CGCGCCGTGGTGCACTGGTGCGCCCCCTCCTCCCCGGTCCACCAGTACTGGCTGCTGCTT
TGGGAAGGCGGCGGGGCTCCGCAGAAGGGGCCCCCCCTCAACTCGACGGTCCGCCGAGCC
GAGCTGAACGGCCTGAAGCCCGGGGGCGCGTACATCGTCTGCGTCGTGGCCGCCAACGCG
GCGGGGGAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGCCTATCCCGACTCCATGCCGCCTGGCTCTCCCTGCCTTCTGTGGCTCCTGGCTGTC
ACCTATTCCGTGGTTCCCGGAGTGCAGCCCTTGGCCGCGGGAGACTTGGAAGAAGAGCAA
GATGAGACACCTTTGCCAGCTGTGCTCTGTGACTACGACCGCTGCCGCCACTTGCAGGTG
CCCTGCCAGGAGCTGCAGAGGGCCAGCCCGACGGCCTGCCTGTGCCCCGGCCTCTCCAGC
GCCTCGCAGCCGCCCAACCCGCCGCGCCTGGGGGAAGTGCGCGTGGAAGCCGAGGAGGGC
CGCGCCGTGGTGCACTGGTGCGCCCCCTCCTCCCCGGTCCACCAGTACTGGCTGCTGCTT
TGGGAAGGCGGCGGGGCTCCGCAGAAGGGGCCCCCCCTCAACTCGACGGTCCGCCGAGCC
GAGCTGAACGGCCTGAAGCCCGGGGGCGCGTACATCGTCTGCGTCGTGGCCGCCAACGCG
GCGGGGGAGAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37181833|gb|AAQ88720.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37181833|gb|AAQ88720.1|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               9-492, gnl|bosTau2|chr29 (32118715-32118235)
               

               
               9-492, gnl|canFam2|chr18 (56999789-56998882)
               

               
               9-492, gnl|dasNov1|scaffold_27827 (15000-15908)
               

               
               9-492, gnl|echTel1|scaffold_294699 (5754-4880)
               

               
               9-492, gnl|hg17|chr11 (62211708-62212602)
               

               
               9-492, gnl|Hg17|chr11 (62212566-62212071)
               

               
               9-492, gnl|mm7|chr19 (8532650-8531779)
               

               
               9-492, gnl|Mm7|chr19 (8531812-8532307)
               

               
               9-492, gnl|monDom2|scaffold_150 (921405-922313)
               

               
               9-492, gnl|panTro1|chr9 (63208689-63209583)
               

               
               9-492, gnl|rheMac2|chr14 (11399921-11399028)
               

               
               9-492, gnl|rn3|chr1 (211681049-211680158)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-492, gnl|bosTau2|chr29 (32118715-32118235)
               

               
               9-492, gnl|canFam2|chr18 (56999789-56998882)
               

               
               9-492, gnl|dasNov1|scaffold_27827 (15000-15908)
               

               
               9-492, gnl|echTel1|scaffold_294699 (5754-4880)
               

               
               9-492, gnl|hg17|chr11 (62211708-62212602)
               

               
               9-492, gnl|Hg17|chr11 (62212566-62212071)
               

               
               9-492, gnl|mm7|chr19 (8532650-8531779)
               

               
               9-492, gnl|Mm7|chr19 (8531812-8532307)
               

               
               9-492, gnl|monDom2|scaffold_150 (921405-922313)
               

               
               9-492, gnl|panTro1|chr9 (63208689-63209583)
               

               
               9-492, gnl|rheMac2|chr14 (11399921-11399028)
               

               
               9-492, gnl|rn3|chr1 (211681049-211680158)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               jca (0.11396)

	9-492, gnl\|bosTau2\|chr29 (32118715-32118235)
	9-492, gnl\|canFam2\|chr18 (56999789-56998882)
	9-492, gnl\|dasNov1\|scaffold_27827 (15000-15908)
	9-492, gnl\|echTel1\|scaffold_294699 (5754-4880)
	9-492, gnl\|hg17\|chr11 (62211708-62212602)
	9-492, gnl\|Hg17\|chr11 (62212566-62212071)
	9-492, gnl\|mm7\|chr19 (8532650-8531779)
	9-492, gnl\|Mm7\|chr19 (8531812-8532307)
	9-492, gnl\|monDom2\|scaffold_150 (921405-922313)
	9-492, gnl\|panTro1\|chr9 (63208689-63209583)
	9-492, gnl\|rheMac2\|chr14 (11399921-11399028)
	9-492, gnl\|rn3\|chr1 (211681049-211680158)