Non-Coding RNA Search

Ss1.1-rjca17c_k19.5

Sequence:


               
               CTGCCTAGCTAATTCTTAATCATAGACAGTTGGAGACTCTAATATACAGAGTATCCATAT
TGATTATAGAAGAATAACAGAAAACAAAGCTAAGTCTCTTTGTGTGGTAGGACAAGTGAG
TTGCTGTTGTGTCATGGTCTTTGGAGTTCCTGGATCTTACTGGGTGCACTGTTTTTGTTT
CTTTGGCAAAGAAGAATTCAGGTGGGGTATGTGAGCGAGAGAGAGGTGTGAGATGTCGGT
GGAGTGCTATGGAGGGCGTTACAGGAACCATAAAACCTTATTGCCCAGCCTCTAGTCTCT
AATCTTTCACCCAGACAGTTAGCAGTTTTGTTTGGGGTATTTCAGAGAACTGCACTCTGT
TAGGATATTTATAATGAGATTTTGCTTATGGTATTAAATCTATTACCAAACTAGAAAGTC
CATATTTGGATCTATGAAACGATTTCTGGAAAGTACAAGGTTTAATGTGTATTAACTCTT
TCACCCAGGCTTCCTTTTCTTCTGTGGTCTGCTCAGTTTTTCCTGGTCTCTTCCAGAGTC
TAGCTCTCGCTTTACCTCCTACAAGAGTGGACATTAACTGGGTGAAGACGTTGTTTTTCA
TTTTCTGCCTGTAACTTTCCTTTTTAAATTTGAATATTTCACGTTGGATGAAATGTGTCC
TTGTGGGGTACCAAGGATGCCACTGATGGGCTGGTGGCTCTTCCCTTGTTTTCCTTACCA
TTTTCTCCAGTCTTCTGTGGCCTTTGGGATTGAGGAACCAAGTTTGCAAGTCAGCTCCAC
CCTTATGACAAAGGAAAGTAAAAGAAGAGAAAGAGGGCTCCTCGTCTGATCTGTACTTGT
ATTAAAAAATGATACTTTTTAGTTTTCTGCTACAATCCTTTTTTCTCCTCCTACAGTGAA
AAAAAAAGTCCTCTTTGTGGAACAGAAAAAAATACGCTCCCTCTAAACAATGGATTGAAA
ATGAATTCGATTTATAAATGAGAAGACTGAGGGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCTAGCTAATTCTTAATCATAGACAGTTGGAGACTCTAATATACAGAGTATCCATAT
TGATTATAGAAGAATAACAGAAAACAAAGCTAAGTCTCTTTGTGTGGTAGGACAAGTGAG
TTGCTGTTGTGTCATGGTCTTTGGAGTTCCTGGATCTTACTGGGTGCACTGTTTTTGTTT
CTTTGGCAAAGAAGAATTCAGGTGGGGTATGTGAGCGAGAGAGAGGTGTGAGATGTCGGT
GGAGTGCTATGGAGGGCGTTACAGGAACCATAAAACCTTATTGCCCAGCCTCTAGTCTCT
AATCTTTCACCCAGACAGTTAGCAGTTTTGTTTGGGGTATTTCAGAGAACTGCACTCTGT
TAGGATATTTATAATGAGATTTTGCTTATGGTATTAAATCTATTACCAAACTAGAAAGTC
CATATTTGGATCTATGAAACGATTTCTGGAAAGTACAAGGTTTAATGTGTATTAACTCTT
TCACCCAGGCTTCCTTTTCTTCTGTGGTCTGCTCAGTTTTTCCTGGTCTCTTCCAGAGTC
TAGCTCTCGCTTTACCTCCTACAAGAGTGGACATTAACTGGGTGAAGACGTTGTTTTTCA
TTTTCTGCCTGTAACTTTCCTTTTTAAATTTGAATATTTCACGTTGGATGAAATGTGTCC
TTGTGGGGTACCAAGGATGCCACTGATGGGCTGGTGGCTCTTCCCTTGTTTTCCTTACCA
TTTTCTCCAGTCTTCTGTGGCCTTTGGGATTGAGGAACCAAGTTTGCAAGTCAGCTCCAC
CCTTATGACAAAGGAAAGTAAAAGAAGAGAAAGAGGGCTCCTCGTCTGATCTGTACTTGT
ATTAAAAAATGATACTTTTTAGTTTTCTGCTACAATCCTTTTTTCTCCTCCTACAGTGAA
AAAAAAAGTCCTCTTTGTGGAACAGAAAAAAATACGCTCCCTCTAAACAATGGATTGAAA
ATGAATTCGATTTATAAATGAGAAGACTGAGGGCGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|58476647|gb|AAH90047.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|58476647|gb|AAH90047.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               859-978, - strand, RNAz p=0.51247

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               859-978, - strand, RNAz p=0.51247

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               601-996, gnl|bosTau2|chr11 (52239765-52240169)
               

               
               601-996, gnl|Hg17|chr2 (27913653-27914049)
               

               
               601-996, gnl|Mm7|chr5 (30654655-30654992)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               601-996, gnl|bosTau2|chr11 (52239765-52240169)
               

               
               601-996, gnl|Hg17|chr2 (27913653-27914049)
               

               
               601-996, gnl|Mm7|chr5 (30654655-30654992)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	601-996, gnl\|bosTau2\|chr11 (52239765-52240169)
	601-996, gnl\|Hg17\|chr2 (27913653-27914049)
	601-996, gnl\|Mm7\|chr5 (30654655-30654992)