Non-Coding RNA Search

Ss1.1-rjca18c_c13.5

Sequence:


               
               CCCTTTGCCGACCTGCCTGCAGCATCAGAGCTGTGACGCCTGCATGTCCTCAGACCTGAC
CTTCAACTGCAGCTGGTGCCATGTCCTCCAGAGATGCTCCAGTGGCTTTGACCGCTACCG
CCAGGAGTGGCTGGCCTACGGCTGTGCCCAGGAGGCAGAGGGCAGGACGTGTGAGGACTT
CCAGGACGAGGACGCCTCATCCTCCCCCGATAGCTCCTTCAGCCCCTTTGACAGAGACCT
CACCACCACTTCCTCCACCCTCTTTGTCGACAGCCTCACCACGGAAGATGACACCAAGTT
GAATCCCTATGCAGGAGGAGAGGGCCTTCAGAACAACCTGTCCCCTGAGACCAAGGGCCC
CCCCGTGCACCTGGGCACCATCGTGGGCATCGTGCTGGCCGTCCTCCTTGTGGCAGCCAT
CATCCTGGCTGGGATCTACATCAACGGCCACCCCACCTCCAACGCTGCCCTCTTCTTCAT
CGAGCGGAGACCGCACCACTGGCCTGCCATGAAGTTTCGCAACCACCCCAACCACTCCAC
CTACACAGAAGTCGAGCCCTCGGGCCATGAGAAGGAGGGCTTTGTGGAGGCGGAGCAGTG
CTGAGAGCTCCATTCTCCCTTGGAAGCCTAGGAAGGAAGACCCGGGACCTCGAAAAACAG
GAGTCAAAGCAAAGCAGAGAAGTAACTAATGTTCCTTGGCCTCCTCTGAACACAACCCGG
ATGGGAAGATGCGTCCAGAGCCCCCGTCTGGCCGTCACATCCCGGAGGTCGAAGCAGAGG
GCAGAAAAGCAGCCACGTTGAGTTTTTAAGGAACAGTAACCTAACTTCCCCCTGTTTAAT
GCCAGGGGTCTCCCCCTCTGAGTCTCTCAGTGGTCTCCTCTGCAGCTGCCCCAGAGGTCC
CCTCCCGCCTGCAGATGGCCAGACGCCCTGCCCGGGTCACCTAGCACCCCTGCCTGTGAC
ACGAGAGAACCAAGCTCTAGAATGGGGCTGCCGCATTCCAGGGTCCATAGACTCAGGAGC
TGGTCCTCATGGCTATGGATTTGCTGTATTTTGCCCCAGCTTCTGTGCTCTGGAAGTCTC
TCCATCTGTATGGCTGCTCCCAGCCCTTTCGGCAAGTCGCTGACTGGCATGCTGGCATCA
GCAGAAAGCCAAATGGGAAGAGAGGAACGAACTTGTAGACAAATCACATTTTTAGGCTTT
GCTCCCTCAGCTTGCCCTTTCTGCCGAGAACCAGTACTTCTGCGTCAAACCCGGGGGCAG
CCCATGCCTCGGGCTTTAGCCAACCGTGGCCCAGCTTGGGCCTGGCGAGCCGTGCTGTGC
GCGGCCACCTCTACAGTGTGGGCTCTTCATCCTAGTGGTATATTTGGTGTCCCCTGTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTTTGCCGACCTGCCTGCAGCATCAGAGCTGTGACGCCTGCATGTCCTCAGACCTGAC
CTTCAACTGCAGCTGGTGCCATGTCCTCCAGAGATGCTCCAGTGGCTTTGACCGCTACCG
CCAGGAGTGGCTGGCCTACGGCTGTGCCCAGGAGGCAGAGGGCAGGACGTGTGAGGACTT
CCAGGACGAGGACGCCTCATCCTCCCCCGATAGCTCCTTCAGCCCCTTTGACAGAGACCT
CACCACCACTTCCTCCACCCTCTTTGTCGACAGCCTCACCACGGAAGATGACACCAAGTT
GAATCCCTATGCAGGAGGAGAGGGCCTTCAGAACAACCTGTCCCCTGAGACCAAGGGCCC
CCCCGTGCACCTGGGCACCATCGTGGGCATCGTGCTGGCCGTCCTCCTTGTGGCAGCCAT
CATCCTGGCTGGGATCTACATCAACGGCCACCCCACCTCCAACGCTGCCCTCTTCTTCAT
CGAGCGGAGACCGCACCACTGGCCTGCCATGAAGTTTCGCAACCACCCCAACCACTCCAC
CTACACAGAAGTCGAGCCCTCGGGCCATGAGAAGGAGGGCTTTGTGGAGGCGGAGCAGTG
CTGAGAGCTCCATTCTCCCTTGGAAGCCTAGGAAGGAAGACCCGGGACCTCGAAAAACAG
GAGTCAAAGCAAAGCAGAGAAGTAACTAATGTTCCTTGGCCTCCTCTGAACACAACCCGG
ATGGGAAGATGCGTCCAGAGCCCCCGTCTGGCCGTCACATCCCGGAGGTCGAAGCAGAGG
GCAGAAAAGCAGCCACGTTGAGTTTTTAAGGAACAGTAACCTAACTTCCCCCTGTTTAAT
GCCAGGGGTCTCCCCCTCTGAGTCTCTCAGTGGTCTCCTCTGCAGCTGCCCCAGAGGTCC
CCTCCCGCCTGCAGATGGCCAGACGCCCTGCCCGGGTCACCTAGCACCCCTGCCTGTGAC
ACGAGAGAACCAAGCTCTAGAATGGGGCTGCCGCATTCCAGGGTCCATAGACTCAGGAGC
TGGTCCTCATGGCTATGGATTTGCTGTATTTTGCCCCAGCTTCTGTGCTCTGGAAGTCTC
TCCATCTGTATGGCTGCTCCCAGCCCTTTCGGCAAGTCGCTGACTGGCATGCTGGCATCA
GCAGAAAGCCAAATGGGAAGAGAGGAACGAACTTGTAGACAAATCACATTTTTAGGCTTT
GCTCCCTCAGCTTGCCCTTTCTGCCGAGAACCAGTACTTCTGCGTCAAACCCGGGGGCAG
CCCATGCCTCGGGCTTTAGCCAACCGTGGCCCAGCTTGGGCCTGGCGAGCCGTGCTGTGC
GCGGCCACCTCTACAGTGTGGGCTCTTCATCCTAGTGGTATATTTGGTGTCCCCTGTATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61861778|ref|XP_617142.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61861778|ref|XP_617142.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               523-1357, - strand, RNAz p=0.59277

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               523-1357, - strand, RNAz p=0.59277

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               139-287, gnl|bosTau2|chr19 (35043062-35043213)
               

               
               139-287, gnl|Hg17|chr17 (34487839-34487692)
               

               
               139-287, gnl|Mm7|chr11 (98041393-98041246)
               


               
               483-1079, gnl|bosTau2|chr19 (35637430-35636847)
               

               
               483-1079, gnl|Hg17|chr17 (34477740-34476305)
               

               
               483-1079, gnl|Mm7|chr11 (98033648-98033096)
               


               
               1088-1380, gnl|bosTau2|chr19 (35636813-35636523)
               

               
               1088-1380, gnl|Hg17|chr17 (34476271-34475991)
               

               
               1088-1380, gnl|Mm7|chr11 (98033076-98032818)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-287, gnl|bosTau2|chr19 (35043062-35043213)
               

               
               139-287, gnl|Hg17|chr17 (34487839-34487692)
               

               
               139-287, gnl|Mm7|chr11 (98041393-98041246)
               


               
               483-1079, gnl|bosTau2|chr19 (35637430-35636847)
               

               
               483-1079, gnl|Hg17|chr17 (34477740-34476305)
               

               
               483-1079, gnl|Mm7|chr11 (98033648-98033096)
               


               
               1088-1380, gnl|bosTau2|chr19 (35636813-35636523)
               

               
               1088-1380, gnl|Hg17|chr17 (34476271-34475991)
               

               
               1088-1380, gnl|Mm7|chr11 (98033076-98032818)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               jca (0.683761)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.683761)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               eep (0.122564)

	139-287, gnl\|bosTau2\|chr19 (35043062-35043213)
	139-287, gnl\|Hg17\|chr17 (34487839-34487692)
	139-287, gnl\|Mm7\|chr11 (98041393-98041246)

	483-1079, gnl\|bosTau2\|chr19 (35637430-35636847)
	483-1079, gnl\|Hg17\|chr17 (34477740-34476305)
	483-1079, gnl\|Mm7\|chr11 (98033648-98033096)

	1088-1380, gnl\|bosTau2\|chr19 (35636813-35636523)
	1088-1380, gnl\|Hg17\|chr17 (34476271-34475991)
	1088-1380, gnl\|Mm7\|chr11 (98033076-98032818)