Non-Coding RNA Search

Ss1.1-rjca18c_c20.5

Sequence:


               
               GTTTTTTTTTTTTTTTTTTTTAGAAGTTTTTTCCTTTTTTAATGTGTAAGTAATTTGACC
AAGTTATGCATTTTTCTGTTAAAACCCCCTCCTTAAATGGAGCTATAAGGTGGCCAAATC
TGAGAACCATTAAATCCACTCTAGTTATAATAAATTTAATATTTGTAAATGTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTTTTTTTTTTTTTAGAAGTTTTTTCCTTTTTTAATGTGTAAGTAATTTGACC
AAGTTATGCATTTTTCTGTTAAAACCCCCTCCTTAAATGGAGCTATAAGGTGGCCAAATC
TGAGAACCATTAAATCCACTCTAGTTATAATAAATTTAATATTTGTAAATGTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               29-122, - strand, RNAz p=0.749604
               

               
               42-150, - strand, RNAz p=0.507498

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-122, - strand, RNAz p=0.749604
               

               
               42-150, - strand, RNAz p=0.507498

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               3-174, gnl|bosTau2|chr19 (37199235-37199068)
               

               
               3-174, gnl|canFam2|chr9 (21702065-21701758)
               

               
               3-174, gnl|hg17|chr17 (40583581-40583897)
               

               
               3-174, gnl|Hg17|chr17 (40583627-40583801)
               

               
               3-174, gnl|mm7|chr11 (103227196-103227504)
               

               
               3-174, gnl|Mm7|chr11 (103227241-103227418)
               

               
               3-174, gnl|monDom2|scaffold_18 (41295952-41295615)
               

               
               3-174, gnl|oryCun1|scaffold_205221 (95282-95594)
               

               
               3-174, gnl|panTro1|chr19 (43864055-43864371)
               

               
               3-174, gnl|rheMac2|chr16 (55247208-55247519)
               

               
               3-174, gnl|rn3|chr10 (92306550-92306857)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-174, gnl|bosTau2|chr19 (37199235-37199068)
               

               
               3-174, gnl|canFam2|chr9 (21702065-21701758)
               

               
               3-174, gnl|hg17|chr17 (40583581-40583897)
               

               
               3-174, gnl|Hg17|chr17 (40583627-40583801)
               

               
               3-174, gnl|mm7|chr11 (103227196-103227504)
               

               
               3-174, gnl|Mm7|chr11 (103227241-103227418)
               

               
               3-174, gnl|monDom2|scaffold_18 (41295952-41295615)
               

               
               3-174, gnl|oryCun1|scaffold_205221 (95282-95594)
               

               
               3-174, gnl|panTro1|chr19 (43864055-43864371)
               

               
               3-174, gnl|rheMac2|chr16 (55247208-55247519)
               

               
               3-174, gnl|rn3|chr10 (92306550-92306857)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	29-122, - strand, RNAz p=0.749604
	42-150, - strand, RNAz p=0.507498

	3-174, gnl\|bosTau2\|chr19 (37199235-37199068)
	3-174, gnl\|canFam2\|chr9 (21702065-21701758)
	3-174, gnl\|hg17\|chr17 (40583581-40583897)
	3-174, gnl\|Hg17\|chr17 (40583627-40583801)
	3-174, gnl\|mm7\|chr11 (103227196-103227504)
	3-174, gnl\|Mm7\|chr11 (103227241-103227418)
	3-174, gnl\|monDom2\|scaffold_18 (41295952-41295615)
	3-174, gnl\|oryCun1\|scaffold_205221 (95282-95594)
	3-174, gnl\|panTro1\|chr19 (43864055-43864371)
	3-174, gnl\|rheMac2\|chr16 (55247208-55247519)
	3-174, gnl\|rn3\|chr10 (92306550-92306857)