Ss1.1-rjca18c_f3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGCCGGGGCCTCTCCATCCATACGGACATGGCATCTGTGACCAAGGCCATGGCAGCTC CCGAGTCTGGACTGGAAGTTCGAGACCGCATGTGGCTCAAGATCACCATCCCTAATGCCT TTCTGGGCTCGGACGTGGTCGACTGGCTCTACCATCACGTGGAGGGCTTTCCGGAGCGGC GCGAGGCCCGGAAGTACGCCAGCGGGCTGCTCAAGGCGGGCCTCATCCGGCACACGGTGA ACAAGATCACCTTCTCCGAGCAGTGCTATTACGTCTTCGGAGACCTCAGCGGCGGCTGTG AGAGTTACCTGGTCAACCTGTCGCTGAACGACAACGATGGCTCCAGTGGTGCCTCGGATC AGGACACCTTGGCTCCTCTGCCTGGGGCCACCCCCTGGCCCCTGCTGCCCACCTTCTCCT ATCAGTACCCCGCCCCGCACCCGTACAGTCCCCAGCCCCCACCCTACCACGAGCTCTCGT CCTACACCTACGGCGGAGGCAGCGCCAGCAGTCAGCACAGCGAGGGGAGCCGGAGCAGCG GGTCCACACGAAGCGATGGGGGGGCAGGGCGCACGGGGAGGCCTGAGGATCGGGCCCCTG AGTCCAAATCCGGCAGCGGCAGTGAGTCCGAGCCCTCCACCCGGGGCGGCAGCCTTCGGC GGGGCGGGGAATCCGGGGGGACTGGTGATGGGGGCCCTCCGCCTTCCAGGGGCTCATCAG GAGGCGCTCCCAATGTCCGAGGCCACCCGGGGCTGCACCCCTACGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGCCGGGGCCTCTCCATCCATACGGACATGGCATCTGTGACCAAGGCCATGGCAGCTC CCGAGTCTGGACTGGAAGTTCGAGACCGCATGTGGCTCAAGATCACCATCCCTAATGCCT TTCTGGGCTCGGACGTGGTCGACTGGCTCTACCATCACGTGGAGGGCTTTCCGGAGCGGC GCGAGGCCCGGAAGTACGCCAGCGGGCTGCTCAAGGCGGGCCTCATCCGGCACACGGTGA ACAAGATCACCTTCTCCGAGCAGTGCTATTACGTCTTCGGAGACCTCAGCGGCGGCTGTG AGAGTTACCTGGTCAACCTGTCGCTGAACGACAACGATGGCTCCAGTGGTGCCTCGGATC AGGACACCTTGGCTCCTCTGCCTGGGGCCACCCCCTGGCCCCTGCTGCCCACCTTCTCCT ATCAGTACCCCGCCCCGCACCCGTACAGTCCCCAGCCCCCACCCTACCACGAGCTCTCGT CCTACACCTACGGCGGAGGCAGCGCCAGCAGTCAGCACAGCGAGGGGAGCCGGAGCAGCG GGTCCACACGAAGCGATGGGGGGGCAGGGCGCACGGGGAGGCCTGAGGATCGGGCCCCTG AGTCCAAATCCGGCAGCGGCAGTGAGTCCGAGCCCTCCACCCGGGGCGGCAGCCTTCGGC GGGGCGGGGAATCCGGGGGGACTGGTGATGGGGGCCCTCCGCCTTCCAGGGGCTCATCAG GAGGCGCTCCCAATGTCCGAGGCCACCCGGGGCTGCACCCCTACGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 644-762, - strand, RNAz p=0.646485 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 644-762, - strand, RNAz p=0.646485 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 126-304, gnl|bosTau2|chr19 (20484772-20484594) | |
| 126-304, gnl|canFam2|chr5 (35192619-35192800) | |
| 126-304, gnl|danRer3|chr7 (51708311-51708148) | |
| 126-304, gnl|dasNov1|scaffold_155505 (3318-3135) | |
| 126-304, gnl|fr1|chrUn (11463891-11464054) | |
| 126-304, gnl|galGal2|chr9 (15163676-15163511) | |
| 126-304, gnl|hg17|chr17 (7071111-7071294) | |
| 126-304, gnl|Hg17|chr17 (7071313-7071135) | |
| 126-304, gnl|loxAfr1|scaffold_118691 (1178-1023) | |
| 126-304, gnl|mm7|chr11 (70090057-70089875) | |
| 126-304, gnl|Mm7|chr11 (70089854-70090032) | |
| 126-304, gnl|monDom2|scaffold_66 (4114640-4114835) | |
| 126-304, gnl|oryCun1|scaffold_188687 (1532-1356) | |
| 126-304, gnl|panTro1|chr19_random (44682266-44682083) | |
| 126-304, gnl|rheMac2|chr16 (6956476-6956659) | |
| 126-304, gnl|rn3|chr10 (56868182-56868000) | |
| 126-304, gnl|tetNig1|chrUn_random (46736862-46736699) | |
| 126-304, gnl|xenTro1|scaffold_1159 (273139-273302) | |
| 525-768, gnl|bosTau2|chr19 (20483841-20483597) | |
| 525-768, gnl|canFam2|chr5 (35191623-35191850) | |
| 525-768, gnl|danRer3|chr7 (51712786-51712556) | |
| 525-768, gnl|dasNov1|scaffold_95197 (3364-3222) | |
| 525-768, gnl|echTel1|scaffold_306143 (1017-790) | |
| 525-768, gnl|fr1|chrUn (11463176-11463385) | |
| 525-768, gnl|galGal2|chr9 (15165497-15165276) | |
| 525-768, gnl|hg17|chr17 (7070045-7070272) | |
| 525-768, gnl|Hg17|chr17 (7070357-7070114) | |
| 525-768, gnl|loxAfr1|scaffold_44629 (15534-15307) | |
| 525-768, gnl|mm7|chr11 (70091031-70090804) | |
| 525-768, gnl|Mm7|chr11 (70090717-70090960) | |
| 525-768, gnl|monDom2|scaffold_66 (4113617-4113826) | |
| 525-768, gnl|oryCun1|scaffold_188687 (2470-2259) | |
| 525-768, gnl|panTro1|chr19_random (44683330-44683103) | |
| 525-768, gnl|rheMac2|chr16 (6955418-6955645) | |
| 525-768, gnl|rn3|chr10 (56869129-56868902) | |
| 525-768, gnl|tetNig1|chrUn_random (46737644-46737385) | |
| 525-768, gnl|xenTro1|scaffold_1159 (272443-272646) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 126-304, gnl|bosTau2|chr19 (20484772-20484594) | |
| 126-304, gnl|canFam2|chr5 (35192619-35192800) | |
| 126-304, gnl|danRer3|chr7 (51708311-51708148) | |
| 126-304, gnl|dasNov1|scaffold_155505 (3318-3135) | |
| 126-304, gnl|fr1|chrUn (11463891-11464054) | |
| 126-304, gnl|galGal2|chr9 (15163676-15163511) | |
| 126-304, gnl|hg17|chr17 (7071111-7071294) | |
| 126-304, gnl|Hg17|chr17 (7071313-7071135) | |
| 126-304, gnl|loxAfr1|scaffold_118691 (1178-1023) | |
| 126-304, gnl|mm7|chr11 (70090057-70089875) | |
| 126-304, gnl|Mm7|chr11 (70089854-70090032) | |
| 126-304, gnl|monDom2|scaffold_66 (4114640-4114835) | |
| 126-304, gnl|oryCun1|scaffold_188687 (1532-1356) | |
| 126-304, gnl|panTro1|chr19_random (44682266-44682083) | |
| 126-304, gnl|rheMac2|chr16 (6956476-6956659) | |
| 126-304, gnl|rn3|chr10 (56868182-56868000) | |
| 126-304, gnl|tetNig1|chrUn_random (46736862-46736699) | |
| 126-304, gnl|xenTro1|scaffold_1159 (273139-273302) | |
| 525-768, gnl|bosTau2|chr19 (20483841-20483597) | |
| 525-768, gnl|canFam2|chr5 (35191623-35191850) | |
| 525-768, gnl|danRer3|chr7 (51712786-51712556) | |
| 525-768, gnl|dasNov1|scaffold_95197 (3364-3222) | |
| 525-768, gnl|echTel1|scaffold_306143 (1017-790) | |
| 525-768, gnl|fr1|chrUn (11463176-11463385) | |
| 525-768, gnl|galGal2|chr9 (15165497-15165276) | |
| 525-768, gnl|hg17|chr17 (7070045-7070272) | |
| 525-768, gnl|Hg17|chr17 (7070357-7070114) | |
| 525-768, gnl|loxAfr1|scaffold_44629 (15534-15307) | |
| 525-768, gnl|mm7|chr11 (70091031-70090804) | |
| 525-768, gnl|Mm7|chr11 (70090717-70090960) | |
| 525-768, gnl|monDom2|scaffold_66 (4113617-4113826) | |
| 525-768, gnl|oryCun1|scaffold_188687 (2470-2259) | |
| 525-768, gnl|panTro1|chr19_random (44683330-44683103) | |
| 525-768, gnl|rheMac2|chr16 (6955418-6955645) | |
| 525-768, gnl|rn3|chr10 (56869129-56868902) | |
| 525-768, gnl|tetNig1|chrUn_random (46737644-46737385) | |
| 525-768, gnl|xenTro1|scaffold_1159 (272443-272646) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) | |
| jca (0.11396) |