Non-Coding RNA Search

Ss1.1-rjca18c_g20.5

Sequence:


               
               AAATCACAACCACACAAGTAACATCTACCCCAACTGAAGATACCACGACATCATCCAAAA
CTACTCTTAAACCAACAACTCTTGTACCCAAAGTAATGACAACAACAAAAAAGACAACCG
AAAAGGCTATGAGCAAACCTGAACAAACAACATCAATACCAAAAGATAGAGCTACTAATT
CTCAAGTGACAACTCCTAAACCCCCAAAGCCAACCAAAGCACCCAAAAAGCCCACTTCCA
CCAAAAAGCCAAAAGCACCTAAAGGGAGAAAACCAAAGACCACGCCAACTCCCCCAAAGT
CGACGACATCAGTACTGCCTAAAACGAGCCCTACTGCTGTAGCAGAAGCCACGCTCCAAA
CCACCACCATTCCTCAACAAACTCTCAACTCAGAAATAATTGACATAAATCCAAAGAATG
AAGACGCAGATACTGCTGAAGGAGAAAAACCTCAGCTGATTCCCAGGCCCCCTGTGTTAA
CTCCTATCGTTATTCCAGGCACTGATTTCACAGTCAGAGGACACAATCAAGGCATTGGCA
TCAACCCCATATTTCCAGATGAGACTAATTTATGCAACGGTAGGCCAGTAGATGGACTGA
CTACTTTGCACAATGGGACATTAGTGGCATTTCGAGGTCATTATTTCTGGATGCTAAATC
CATTCACTCCACCATCTCCACCTCGTAGAATTACTGAAGTTTGGGGCATTCCCTCCCCCA
TTGATACTGTTTTTACTAGATGCAACTGTGAAAGAAAAACTTTTTTCTTTAAGGATTCTC
AGTACTGGCGTTTCACCAACGATATAAAAGATGCAGGGTATCCCAAACTGATTTCCAAAG
GCTTTGGAGGACTAAATGGAAAAATAGTGGCAGCTCTCTCAATAGCTAAATACAAGAACA
GACCTGAATCTGTGTATTTTTTCAAGCGAGGTGGCAGCATTCAGCAGTATACTTATAAAC
AGGAACCCATCACAAAGTGCACTGGAAGAAGGCCTGCAGTACATTACTCAGTGTATGGAG
AAACAACACAGGTTAGGAGGCGTCGATTTGAACGTGCTATAGGACCTTCTAAAACACACA
CCATCAGAATTCAGTATTCGCCCATCAGACTCACTTACCAAGACAAAGGTTTCCTTCATA
ATGAAGTTAAAGTGAGTACACTGTGGAGAGGACTTCCGAATGTGGTTACTTCAGCTATAT
CACTGCCCAACATCAGAAGACCTGATGGCTACGATTACTATGCTTTCTCTAGAGATCAAT
ATTATAACATCGATGTGCCTCAAAGGACAGCAAGAGCCATTACTACTCGTTCTGGGCAGA
CCTTATCCAATGTCTGGTACAACTGTCCTTAGACTGATGGGCAACGGAAGAATCAACTAA
TTAAAATGAAGACAAGAATGATAAATTTTGACACTGAAATACATTTTATTAATAAAGAAT
GTTGAGATAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCACAACCACACAAGTAACATCTACCCCAACTGAAGATACCACGACATCATCCAAAA
CTACTCTTAAACCAACAACTCTTGTACCCAAAGTAATGACAACAACAAAAAAGACAACCG
AAAAGGCTATGAGCAAACCTGAACAAACAACATCAATACCAAAAGATAGAGCTACTAATT
CTCAAGTGACAACTCCTAAACCCCCAAAGCCAACCAAAGCACCCAAAAAGCCCACTTCCA
CCAAAAAGCCAAAAGCACCTAAAGGGAGAAAACCAAAGACCACGCCAACTCCCCCAAAGT
CGACGACATCAGTACTGCCTAAAACGAGCCCTACTGCTGTAGCAGAAGCCACGCTCCAAA
CCACCACCATTCCTCAACAAACTCTCAACTCAGAAATAATTGACATAAATCCAAAGAATG
AAGACGCAGATACTGCTGAAGGAGAAAAACCTCAGCTGATTCCCAGGCCCCCTGTGTTAA
CTCCTATCGTTATTCCAGGCACTGATTTCACAGTCAGAGGACACAATCAAGGCATTGGCA
TCAACCCCATATTTCCAGATGAGACTAATTTATGCAACGGTAGGCCAGTAGATGGACTGA
CTACTTTGCACAATGGGACATTAGTGGCATTTCGAGGTCATTATTTCTGGATGCTAAATC
CATTCACTCCACCATCTCCACCTCGTAGAATTACTGAAGTTTGGGGCATTCCCTCCCCCA
TTGATACTGTTTTTACTAGATGCAACTGTGAAAGAAAAACTTTTTTCTTTAAGGATTCTC
AGTACTGGCGTTTCACCAACGATATAAAAGATGCAGGGTATCCCAAACTGATTTCCAAAG
GCTTTGGAGGACTAAATGGAAAAATAGTGGCAGCTCTCTCAATAGCTAAATACAAGAACA
GACCTGAATCTGTGTATTTTTTCAAGCGAGGTGGCAGCATTCAGCAGTATACTTATAAAC
AGGAACCCATCACAAAGTGCACTGGAAGAAGGCCTGCAGTACATTACTCAGTGTATGGAG
AAACAACACAGGTTAGGAGGCGTCGATTTGAACGTGCTATAGGACCTTCTAAAACACACA
CCATCAGAATTCAGTATTCGCCCATCAGACTCACTTACCAAGACAAAGGTTTCCTTCATA
ATGAAGTTAAAGTGAGTACACTGTGGAGAGGACTTCCGAATGTGGTTACTTCAGCTATAT
CACTGCCCAACATCAGAAGACCTGATGGCTACGATTACTATGCTTTCTCTAGAGATCAAT
ATTATAACATCGATGTGCCTCAAAGGACAGCAAGAGCCATTACTACTCGTTCTGGGCAGA
CCTTATCCAATGTCTGGTACAACTGTCCTTAGACTGATGGGCAACGGAAGAATCAACTAA
TTAAAATGAAGACAAGAATGATAAATTTTGACACTGAAATACATTTTATTAATAAAGAAT
GTTGAGATAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46243591|gb|AAS83977.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46243591|gb|AAS83977.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               265-461, - strand, RNAz p=0.886906

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-461, - strand, RNAz p=0.886906

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               6-569, gnl|bosTau2|chr16 (49067113-49066556)
               

               
               6-569, gnl|Hg17|chr1 (183009374-183009940)
               

               
               6-569, gnl|Mm7|chr1 (150380227-150379699)
               


               
               628-774, gnl|bosTau2|chr16 (49065174-49065028)
               

               
               628-774, gnl|Hg17|chr1 (183011814-183011960)
               

               
               628-774, gnl|Mm7|chr1 (150378023-150377877)
               


               
               929-1130, gnl|bosTau2|chr16 (49064183-49063982)
               

               
               929-1130, gnl|Hg17|chr1 (183012962-183013163)
               

               
               929-1130, gnl|Mm7|chr1 (150377106-150376902)
               


               
               1246-1452, gnl|bosTau2|chr16 (49062699-49062493)
               

               
               1246-1452, gnl|Hg17|chr1 (183014461-183014661)
               

               
               1246-1452, gnl|Mm7|chr1 (150375745-150375540)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-569, gnl|bosTau2|chr16 (49067113-49066556)
               

               
               6-569, gnl|Hg17|chr1 (183009374-183009940)
               

               
               6-569, gnl|Mm7|chr1 (150380227-150379699)
               


               
               628-774, gnl|bosTau2|chr16 (49065174-49065028)
               

               
               628-774, gnl|Hg17|chr1 (183011814-183011960)
               

               
               628-774, gnl|Mm7|chr1 (150378023-150377877)
               


               
               929-1130, gnl|bosTau2|chr16 (49064183-49063982)
               

               
               929-1130, gnl|Hg17|chr1 (183012962-183013163)
               

               
               929-1130, gnl|Mm7|chr1 (150377106-150376902)
               


               
               1246-1452, gnl|bosTau2|chr16 (49062699-49062493)
               

               
               1246-1452, gnl|Hg17|chr1 (183014461-183014661)
               

               
               1246-1452, gnl|Mm7|chr1 (150375745-150375540)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               jca (1.25356)
               

               
               nca (0.273748)
               

               
               aor (0.195274)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (1.25356)
               

               
               nca (0.273748)
               

               
               aor (0.195274)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               med (0.116252)

	6-569, gnl\|bosTau2\|chr16 (49067113-49066556)
	6-569, gnl\|Hg17\|chr1 (183009374-183009940)
	6-569, gnl\|Mm7\|chr1 (150380227-150379699)

	628-774, gnl\|bosTau2\|chr16 (49065174-49065028)
	628-774, gnl\|Hg17\|chr1 (183011814-183011960)
	628-774, gnl\|Mm7\|chr1 (150378023-150377877)

	929-1130, gnl\|bosTau2\|chr16 (49064183-49063982)
	929-1130, gnl\|Hg17\|chr1 (183012962-183013163)
	929-1130, gnl\|Mm7\|chr1 (150377106-150376902)

	1246-1452, gnl\|bosTau2\|chr16 (49062699-49062493)
	1246-1452, gnl\|Hg17\|chr1 (183014461-183014661)
	1246-1452, gnl\|Mm7\|chr1 (150375745-150375540)

	jca (1.25356)
	nca (0.273748)
	aor (0.195274)
	lun (0.150489)
	fat (0.147427)
	liv (0.146284)
	med (0.116252)