Non-Coding RNA Search

Ss1.1-rjca18c_g22.5

Sequence:


               
               CCTCAACGCCATCAAGAGGGTGGGGTATTGGAGCGGTGGGACCAGCACCGGGGCTGCCAT
CAACTATGCCCTAGAACAGCTCTTCAAGAAGTCCAAGCCCAACAAGAGGAAGTTAATGAT
TCTCATCACGGACGGGAGGTCCTACGACGACGTCCGGATACCGGCCATGGTTGCACATCA
CAAGGGTGTGATCACCTACGCAATAGGCGTGGCATGGGCTGCACAGGAGGAGCTGGAAAT
CATCGCCACTCACCCTGCCAGGGACCATGCCTTCTTTGTGGACGAGTTTGACAACCTCTA
CAAATCCGTGCCCAAGATCATCCAGAACATTTGTACAGAGTTCAACTCACAGCCTCGGAA
CTGAATTCAGAGCAGGCAAAGCACCAGCAAGAGCTGCTTTCCCGACCAGCTCTGGGACAA
CCCCCAACGCTTTATGGGACGCACGTGGGGCAGCAAGGCACGCAGGGCTTGGAAAGGATG
TCTTGTTATTATTCTTTGCCAGTGTGGTTTTTCAGACTTCAAGACTTGGAGTTAGAAAGA
TGATCATAAATGTGTAGAATGAGCCAAAATGATAGGTCATTTTGGGAGTGCTGGGGATTT
TAATTTTGAGAATTGTTTTTAAAGTAAGTATTGAGACTAGAATGCAGCACTTATGACAGG
CTTAAGTAGAGTTTTTGTGAGATTTTTCACATTTTTATTTCCCCTTGGAATTCTGTAACT
CTCCACAAGTTCATTTTTGTCATGACAGTAGAGAAGTCGATTAATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCAACGCCATCAAGAGGGTGGGGTATTGGAGCGGTGGGACCAGCACCGGGGCTGCCAT
CAACTATGCCCTAGAACAGCTCTTCAAGAAGTCCAAGCCCAACAAGAGGAAGTTAATGAT
TCTCATCACGGACGGGAGGTCCTACGACGACGTCCGGATACCGGCCATGGTTGCACATCA
CAAGGGTGTGATCACCTACGCAATAGGCGTGGCATGGGCTGCACAGGAGGAGCTGGAAAT
CATCGCCACTCACCCTGCCAGGGACCATGCCTTCTTTGTGGACGAGTTTGACAACCTCTA
CAAATCCGTGCCCAAGATCATCCAGAACATTTGTACAGAGTTCAACTCACAGCCTCGGAA
CTGAATTCAGAGCAGGCAAAGCACCAGCAAGAGCTGCTTTCCCGACCAGCTCTGGGACAA
CCCCCAACGCTTTATGGGACGCACGTGGGGCAGCAAGGCACGCAGGGCTTGGAAAGGATG
TCTTGTTATTATTCTTTGCCAGTGTGGTTTTTCAGACTTCAAGACTTGGAGTTAGAAAGA
TGATCATAAATGTGTAGAATGAGCCAAAATGATAGGTCATTTTGGGAGTGCTGGGGATTT
TAATTTTGAGAATTGTTTTTAAAGTAAGTATTGAGACTAGAATGCAGCACTTATGACAGG
CTTAAGTAGAGTTTTTGTGAGATTTTTCACATTTTTATTTCCCCTTGGAATTCTGTAACT
CTCCACAAGTTCATTTTTGTCATGACAGTAGAGAAGTCGATTAATTAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-187, gnl|bosTau2|chr19 (36248946-36249132)
               

               
               1-187, gnl|Hg17|chr2 (36947595-36947781)
               

               
               1-187, gnl|Mm7|chr17 (76925609-76925795)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-187, gnl|bosTau2|chr19 (36248946-36249132)
               

               
               1-187, gnl|Hg17|chr2 (36947595-36947781)
               

               
               1-187, gnl|Mm7|chr17 (76925609-76925795)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fhi (0.169578)
               

               
               ste (0.135208)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ste (0.135208)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-187, gnl\|bosTau2\|chr19 (36248946-36249132)
	1-187, gnl\|Hg17\|chr2 (36947595-36947781)
	1-187, gnl\|Mm7\|chr17 (76925609-76925795)

	fhi (0.169578)
	ste (0.135208)
	jca (0.11396)
	nbm (0.0993246)
	ldo (0.0970026)