Non-Coding RNA Search

Ss1.1-rjca18c_i22.5

Sequence:


               
               TAGATTCCAAATTATGCGTTCTAATTTGAAATGAGATGCTTTAAAAATTACACATATCTA
AATCCTGGCTCATCCTCTGACATGGATTTACTAGATAAGAACAAAGGTCCAATTTCGCAA
TAAAACCTTTGATGTCATAAAGAAACATAAAGACAAGATATCACAAGGTTAATTTCATAT
GTGAATAGACCATCTCAACTATAAATACACATTTTTACACGTGTAAATCCACATTTTTGG
CTGATAAGAGGGATTTTCTCCTAAAGAAGGAAGCTGTGCTGACTTCTTTCTTAGAAGTCT
TTGGATACTTGGTATTTTTAAATTTTTTTTTTCCATTCTGCTAAGGAAAGACCACAATGT
TTAGATGGTAACCCTATTGAATGCCTGCTTGCGTTTAGTGAAAGGTTGGTAAAAGGAAAC
AAAACAGTTTTGAGTCCAGTGATGGAACCCTCTTCACCTTCCTAGGATGAGAGACTACTG
TATTGCAGATTACTTCATTCACTTTTTGGACATTATATAGCACTTGAGACTTGGTTTTAC
ATGCTGCTGAGGCTGGAAGAAAAGTGGCATAAGTGGTTTTTCTGTTCAGAAGATGTGATG
GACCCTACAGTATGACCTGCCTTCAACTTTGGACCTAGAGGAGTGGCAGAAAAAATGATG
ACAGTCTTCATACTATTTCTTTCTCCTAAGGAAAAAAAGTGAAAATGCTTTATGCAGCTC
CATCTCACTTTATGGCACTTCACATTCTACAGCTCTGTTTTCTGTAAAAGCATAAATGAC
TTCTTTCCTTTGACCCGGGATAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGATTCCAAATTATGCGTTCTAATTTGAAATGAGATGCTTTAAAAATTACACATATCTA
AATCCTGGCTCATCCTCTGACATGGATTTACTAGATAAGAACAAAGGTCCAATTTCGCAA
TAAAACCTTTGATGTCATAAAGAAACATAAAGACAAGATATCACAAGGTTAATTTCATAT
GTGAATAGACCATCTCAACTATAAATACACATTTTTACACGTGTAAATCCACATTTTTGG
CTGATAAGAGGGATTTTCTCCTAAAGAAGGAAGCTGTGCTGACTTCTTTCTTAGAAGTCT
TTGGATACTTGGTATTTTTAAATTTTTTTTTTCCATTCTGCTAAGGAAAGACCACAATGT
TTAGATGGTAACCCTATTGAATGCCTGCTTGCGTTTAGTGAAAGGTTGGTAAAAGGAAAC
AAAACAGTTTTGAGTCCAGTGATGGAACCCTCTTCACCTTCCTAGGATGAGAGACTACTG
TATTGCAGATTACTTCATTCACTTTTTGGACATTATATAGCACTTGAGACTTGGTTTTAC
ATGCTGCTGAGGCTGGAAGAAAAGTGGCATAAGTGGTTTTTCTGTTCAGAAGATGTGATG
GACCCTACAGTATGACCTGCCTTCAACTTTGGACCTAGAGGAGTGGCAGAAAAAATGATG
ACAGTCTTCATACTATTTCTTTCTCCTAAGGAAAAAAAGTGAAAATGCTTTATGCAGCTC
CATCTCACTTTATGGCACTTCACATTCTACAGCTCTGTTTTCTGTAAAAGCATAAATGAC
TTCTTTCCTTTGACCCGGGATAGG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-560, gnl|bosTau2|chr6 (41533309-41532748)
               


               
               660-794, gnl|bosTau2|chr6 (41532585-41532451)
               

               
               660-794, gnl|Hg17|chr2 (172856569-172856703)
               

               
               660-794, gnl|Mm7|chr2 (119341456-119341589)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-560, gnl|bosTau2|chr6 (41533309-41532748)
               


               
               660-794, gnl|bosTau2|chr6 (41532585-41532451)
               

               
               660-794, gnl|Hg17|chr2 (172856569-172856703)
               

               
               660-794, gnl|Mm7|chr2 (119341456-119341589)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1-560, gnl\|bosTau2\|chr6 (41533309-41532748)

	660-794, gnl\|bosTau2\|chr6 (41532585-41532451)
	660-794, gnl\|Hg17\|chr2 (172856569-172856703)
	660-794, gnl\|Mm7\|chr2 (119341456-119341589)

	mgm (0.180343)
	isp (0.150376)
	lin (0.145603)
	spl (0.143184)
	jca (0.11396)
	cty (0.10408)