Ss1.1-rjca18c_k2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAAAGTAGGAGACCCCCACAAGAAGCCGCCCACGAGACCCTCGCGCGCAGCCATGAGCC CCGCCCCCCACTGGTGTTCGGAGAGGGGCGGGACCTGGAGAGAGGCTGCTCCGTGACCCC ACCATGTCCACCCCCACCACGAGTTCCCTGGACACCCCCTTGCCTGGTGGAAATGGTCCC CTTCAGCCCAGCACTCTGTCGTCTTCATCCGATGGAAAGGAGGATGGCCCTGAGCCATTG CCCGGAGGGGCGGACCCTGATGTCCCGAGCACTGACGGGGCCGGCTCAGCCTCCGTTGTG GTCATCCTAGACCCAGCAGAGGAGCCGGAGCGGAAGCGAAAGAAGGGCCCGGCTCCAAAG ATGCTGGGCGACGAGCTGTGCCAAGTGTGCGGGGACACGGCCTCCGGCTTCCACTACAAC GTGCTCAGCTGTGAAGGCTGCAAGGGCTTCTTCCGGCGAAGTGTGATCCGAGGCGGGGCC GGGCGCTATGCCTGCCGGGGCGGTGGAACCTGCCAGATGGATGCCTTCATGCGGCGCAAG TGCCAGCAGTGCCGGCTGAGAAAGTGCAAGGAGGCTGGGATGAGGGAGCAGTGCGTCCTC TCCAAAGAGCAGATACGGAAGAAGAAGATTCGGAAGCAGCAGCAGCAGCAGCAGCAGCAG TCATCACCCACAGCTCCCGGAGTCAGCAGCGGCTCGGCTTCTGGGCCGGGGGCCTCCCCT GGAGGATCCGACGGGGGTGGCCAGGGCTCTGGGGAAGGCGAGGGCATCCAGTTAACAGCT GCGCAGGAACTGATGATCCAGCAGTTGGTGGCGGCCCAGCTGCAGTGCAATAAACGCTCC TTCTCGGACCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAAAGTAGGAGACCCCCACAAGAAGCCGCCCACGAGACCCTCGCGCGCAGCCATGAGCC CCGCCCCCCACTGGTGTTCGGAGAGGGGCGGGACCTGGAGAGAGGCTGCTCCGTGACCCC ACCATGTCCACCCCCACCACGAGTTCCCTGGACACCCCCTTGCCTGGTGGAAATGGTCCC CTTCAGCCCAGCACTCTGTCGTCTTCATCCGATGGAAAGGAGGATGGCCCTGAGCCATTG CCCGGAGGGGCGGACCCTGATGTCCCGAGCACTGACGGGGCCGGCTCAGCCTCCGTTGTG GTCATCCTAGACCCAGCAGAGGAGCCGGAGCGGAAGCGAAAGAAGGGCCCGGCTCCAAAG ATGCTGGGCGACGAGCTGTGCCAAGTGTGCGGGGACACGGCCTCCGGCTTCCACTACAAC GTGCTCAGCTGTGAAGGCTGCAAGGGCTTCTTCCGGCGAAGTGTGATCCGAGGCGGGGCC GGGCGCTATGCCTGCCGGGGCGGTGGAACCTGCCAGATGGATGCCTTCATGCGGCGCAAG TGCCAGCAGTGCCGGCTGAGAAAGTGCAAGGAGGCTGGGATGAGGGAGCAGTGCGTCCTC TCCAAAGAGCAGATACGGAAGAAGAAGATTCGGAAGCAGCAGCAGCAGCAGCAGCAGCAG TCATCACCCACAGCTCCCGGAGTCAGCAGCGGCTCGGCTTCTGGGCCGGGGGCCTCCCCT GGAGGATCCGACGGGGGTGGCCAGGGCTCTGGGGAAGGCGAGGGCATCCAGTTAACAGCT GCGCAGGAACTGATGATCCAGCAGTTGGTGGCGGCCCAGCTGCAGTGCAATAAACGCTCC TTCTCGGACCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 187-301, gnl|bosTau2|chr18 (49220893-49221007) | |
| 187-301, gnl|canFam2|chr1 (109220067-109219678) | |
| 187-301, gnl|echTel1|scaffold_263624 (2040-1637) | |
| 187-301, gnl|hg17|chr19 (55572628-55573022) | |
| 187-301, gnl|Hg17|chr19 (55572810-55572939) | |
| 187-301, gnl|loxAfr1|scaffold_52506 (1983-2396) | |
| 187-301, gnl|mm7|chr7 (40727297-40726967) | |
| 187-301, gnl|Mm7|chr7 (40727125-40727029) | |
| 187-301, gnl|panTro1|chr20 (52879258-52879665) | |
| 187-301, gnl|rheMac2|chr19 (56582941-56583349) | |
| 187-301, gnl|rn3|chr1 (95109472-95109145) | |
| 334-593, gnl|bosTau2|chr15 (49041571-49041318) | |
| 334-593, gnl|canFam2|chr18 (45372631-45372344) | |
| 334-593, gnl|danRer3|chrUn (78713298-78713023) | |
| 334-593, gnl|dasNov1|scaffold_3175 (15899-16186) | |
| 334-593, gnl|echTel1|scaffold_311186 (68374-68663) | |
| 334-593, gnl|fr1|chrUn (94933974-94934259) | |
| 334-593, gnl|galGal2|chr5 (20415288-20415002) | |
| 334-593, gnl|hg17|chr11 (47238534-47238821) | |
| 334-593, gnl|Hg17|chr11 (47238550-47238803) | |
| 334-593, gnl|loxAfr1|scaffold_14545 (23263-23550) | |
| 334-593, gnl|mm7|chr2 (91042775-91042488) | |
| 334-593, gnl|Mm7|chr2 (91042757-91042504) | |
| 334-593, gnl|oryCun1|scaffold_200186 (286767-286487) | |
| 334-593, gnl|panTro1|chr9 (47755044-47755331) | |
| 334-593, gnl|rheMac2|chr14 (24859128-24858841) | |
| 334-593, gnl|rn3|chr3 (75445593-75445308) | |
| 334-593, gnl|tetNig1|chr5 (11154159-11154417) | |
| 334-593, gnl|xenTro1|scaffold_98 (2357910-2358197) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 187-301, gnl|bosTau2|chr18 (49220893-49221007) | |
| 187-301, gnl|canFam2|chr1 (109220067-109219678) | |
| 187-301, gnl|echTel1|scaffold_263624 (2040-1637) | |
| 187-301, gnl|hg17|chr19 (55572628-55573022) | |
| 187-301, gnl|Hg17|chr19 (55572810-55572939) | |
| 187-301, gnl|loxAfr1|scaffold_52506 (1983-2396) | |
| 187-301, gnl|mm7|chr7 (40727297-40726967) | |
| 187-301, gnl|Mm7|chr7 (40727125-40727029) | |
| 187-301, gnl|panTro1|chr20 (52879258-52879665) | |
| 187-301, gnl|rheMac2|chr19 (56582941-56583349) | |
| 187-301, gnl|rn3|chr1 (95109472-95109145) | |
| 334-593, gnl|bosTau2|chr15 (49041571-49041318) | |
| 334-593, gnl|canFam2|chr18 (45372631-45372344) | |
| 334-593, gnl|danRer3|chrUn (78713298-78713023) | |
| 334-593, gnl|dasNov1|scaffold_3175 (15899-16186) | |
| 334-593, gnl|echTel1|scaffold_311186 (68374-68663) | |
| 334-593, gnl|fr1|chrUn (94933974-94934259) | |
| 334-593, gnl|galGal2|chr5 (20415288-20415002) | |
| 334-593, gnl|hg17|chr11 (47238534-47238821) | |
| 334-593, gnl|Hg17|chr11 (47238550-47238803) | |
| 334-593, gnl|loxAfr1|scaffold_14545 (23263-23550) | |
| 334-593, gnl|mm7|chr2 (91042775-91042488) | |
| 334-593, gnl|Mm7|chr2 (91042757-91042504) | |
| 334-593, gnl|oryCun1|scaffold_200186 (286767-286487) | |
| 334-593, gnl|panTro1|chr9 (47755044-47755331) | |
| 334-593, gnl|rheMac2|chr14 (24859128-24858841) | |
| 334-593, gnl|rn3|chr3 (75445593-75445308) | |
| 334-593, gnl|tetNig1|chr5 (11154159-11154417) | |
| 334-593, gnl|xenTro1|scaffold_98 (2357910-2358197) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| eep (0.122564) | |
| jca (0.11396) |