Non-Coding RNA Search

Ss1.1-rjca18c_n3.5

Sequence:


               
               ATTCCTTCGACTTCTCTCTAGCCGAGCTTCCCAGAACATCACATATCACTGCAAGAATAG
CATGGCGTACATGGAACATGCCAGTGGGAATGTAAAGAAAGCCTTGAGGCTGATGGGATC
AAATGAAGGTGAATTCAAGGCTGAAGGAAATAGCAAATTCACATACACCGTTCTGGAGGA
TGGTTGCACTAAACACACTGGGGAATGGGGCAAGACAGTCTTCGAATATCGAACACGCAA
GGCTGTGAGACTACCTATGGTAGATATGGCACCCTATGATATGGGTGGTCCTGATCAAGA
ATTGGGTGCGGACATGGGCCCTGTTGGCTTTTTATAAACCAAACTCTATCTGAATTCCCA
GCAAAAGATTTCACACTCCATATGTGTTCCTTTGGTTCTCATCTGGTCAACCAGTACAAG
TGACCAACTAAATTCCAGTTATTTATTTCCAAAATTTTGGGAAAAAGGATAATTGGACCT
AAAAAGGATACTTTTTTCTGTCACACCAAATACAGTTCGAATGCTTTTGGTTCTATTTTT
TTACCAGTTCCAATTTCAAATGTCTCAAGGGTGCTATAATAAATAAACTTCAACACTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCTTCGACTTCTCTCTAGCCGAGCTTCCCAGAACATCACATATCACTGCAAGAATAG
CATGGCGTACATGGAACATGCCAGTGGGAATGTAAAGAAAGCCTTGAGGCTGATGGGATC
AAATGAAGGTGAATTCAAGGCTGAAGGAAATAGCAAATTCACATACACCGTTCTGGAGGA
TGGTTGCACTAAACACACTGGGGAATGGGGCAAGACAGTCTTCGAATATCGAACACGCAA
GGCTGTGAGACTACCTATGGTAGATATGGCACCCTATGATATGGGTGGTCCTGATCAAGA
ATTGGGTGCGGACATGGGCCCTGTTGGCTTTTTATAAACCAAACTCTATCTGAATTCCCA
GCAAAAGATTTCACACTCCATATGTGTTCCTTTGGTTCTCATCTGGTCAACCAGTACAAG
TGACCAACTAAATTCCAGTTATTTATTTCCAAAATTTTGGGAAAAAGGATAATTGGACCT
AAAAAGGATACTTTTTTCTGTCACACCAAATACAGTTCGAATGCTTTTGGTTCTATTTTT
TTACCAGTTCCAATTTCAAATGTCTCAAGGGTGCTATAATAAATAAACTTCAACACTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26325400|dbj|BAC26454.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26325400|dbj|BAC26454.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-189, gnl|bosTau2|chr19 (29188516-29188703)
               

               
               2-189, gnl|Hg17|chr17 (45618326-45618139)
               

               
               2-189, gnl|Mm7|chr11 (95060194-95060381)
               


               
               191-600, gnl|bosTau2|chr2 (3118979-3118571)
               

               
               191-600, gnl|Hg17|chr2 (189701860-189702279)
               

               
               191-600, gnl|Mm7|chr1 (45585252-45585664)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-189, gnl|bosTau2|chr19 (29188516-29188703)
               

               
               2-189, gnl|Hg17|chr17 (45618326-45618139)
               

               
               2-189, gnl|Mm7|chr11 (95060194-95060381)
               


               
               191-600, gnl|bosTau2|chr2 (3118979-3118571)
               

               
               191-600, gnl|Hg17|chr2 (189701860-189702279)
               

               
               191-600, gnl|Mm7|chr1 (45585252-45585664)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jca (1.36752)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (1.36752)
               

               
               ese (0.126502)

	2-189, gnl\|bosTau2\|chr19 (29188516-29188703)
	2-189, gnl\|Hg17\|chr17 (45618326-45618139)
	2-189, gnl\|Mm7\|chr11 (95060194-95060381)

	191-600, gnl\|bosTau2\|chr2 (3118979-3118571)
	191-600, gnl\|Hg17\|chr2 (189701860-189702279)
	191-600, gnl\|Mm7\|chr1 (45585252-45585664)