Non-Coding RNA Search

Ss1.1-rjca18c_o22.5

Sequence:


               
               TTTGGGCTTTAAAAGTTCTGATCCTTTTCTTTCTAGATTTGAACATTTTCTGGCTACTGA
GAAAGGGAGAGAAAAATCAAAATATGACTTCCGGTGTTTCATTAGATGGGTTTATGTTTA
AATTTATATTGACTTTGAAATATTTTTATTACATCAGATAAACAGGCTTCAGCTACTTCT
GCTACTAGTTTTTAGCAGGTTGATTCTAAATATAGCCTGTGCACTGTTATTTAAATACCT
GGTGCATTAGATAATCTACATTTTGACCCTAGATTTCTTATGTGCTTGACACACTGTTGT
CCAGATAACATTGAGAAAAGTCGGGAAGAGCAGGCTCAATTCAGCCTTGGGCTTTTGCAG
AAAGGCCACAAATGGAAAGTGTGAGATTATGCTCTGACAAAAGATAAAGCTTTTAATGGA
GAATTCATGTATTTGTTCCTCCTTTGAAAGGATGGCATTTTCATGTTGCTTTGCTGCCAG
ATGTTCATCTGGTTGCTGTGAAGTGATTGTTTTTTTACTTTATAAAAAAAAATATTTTTA
ATTATGGAGATTTCTCTGAGGCCCCAAGAAGGTTTACTTGATAAGAAAATTATTTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGGCTTTAAAAGTTCTGATCCTTTTCTTTCTAGATTTGAACATTTTCTGGCTACTGA
GAAAGGGAGAGAAAAATCAAAATATGACTTCCGGTGTTTCATTAGATGGGTTTATGTTTA
AATTTATATTGACTTTGAAATATTTTTATTACATCAGATAAACAGGCTTCAGCTACTTCT
GCTACTAGTTTTTAGCAGGTTGATTCTAAATATAGCCTGTGCACTGTTATTTAAATACCT
GGTGCATTAGATAATCTACATTTTGACCCTAGATTTCTTATGTGCTTGACACACTGTTGT
CCAGATAACATTGAGAAAAGTCGGGAAGAGCAGGCTCAATTCAGCCTTGGGCTTTTGCAG
AAAGGCCACAAATGGAAAGTGTGAGATTATGCTCTGACAAAAGATAAAGCTTTTAATGGA
GAATTCATGTATTTGTTCCTCCTTTGAAAGGATGGCATTTTCATGTTGCTTTGCTGCCAG
ATGTTCATCTGGTTGCTGTGAAGTGATTGTTTTTTTACTTTATAAAAAAAAATATTTTTA
ATTATGGAGATTTCTCTGAGGCCCCAAGAAGGTTTACTTGATAAGAAAATTATTTCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               406-540, - strand, RNAz p=0.993163

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               406-540, - strand, RNAz p=0.993163

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-540, gnl|bosTau2|chr21 (4293387-4293934)
               

               
               1-540, gnl|Hg17|chr15 (97744601-97745438)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr21 (4293387-4293934)
               

               
               1-540, gnl|Hg17|chr15 (97744601-97745438)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	1-540, gnl\|bosTau2\|chr21 (4293387-4293934)
	1-540, gnl\|Hg17\|chr15 (97744601-97745438)