Non-Coding RNA Search

Ss1.1-rjca19c_o12.5

Sequence:


               
               CAAGTTCGTCAATTGAGATTAAAAGTAAAGGAATAGAGAATGTGCAATACCGTCTGGCTG
GGGGCTGTCCCTGCCCTGAGCTGAGTCCCTTCCCTGGGAGCCAGGCCACCTTTGAATGGG
GTTTAGAAGCAAGATGTGTAGAGATGGGGGATGATGGGGAAGGAGAGCCTGGAGTGAGTG
CCTGCCAAGGTGCTGAGGTGATAGGGGAGAAGGTGGAGTCTTCCCTGTTTTTATCCCCTC
AGGGTCAGTTACATTAGAGGCTGCTTGTTGACTAGTATAGCTCCATGACCCTTTGCTCAA
TCACTGAGATGTGATTTCTTACCCTCTCTTCTCCCCATATTCATTCCCTTCCCAGGGATT
AGTGACGGGGGTGAGGTTCCCCTAATCATGGTAAAGTATTAGCCTTCCACCTCCTCCCTT
TCCTCCCTCTCCCCCGTCCTTCTGTTTTCCTCATTTCTCTACCTTTTCATCACCGATTGC
CTTGTGTCCCTCCAAGTCTGTTGTTGCTGTCCATCCCCAGGCCTTGGGCCCCATAGACAC
TAAACCTCATGCTCTAAAAATAGGAGGAAAGATCCTCTGTTCAGAGTTATCTTTACCCGT
GGAGCACTAAAGCTCAGGGTGATACTAGAGTGAGGATCCCACCAGTTTTACCTGGCTTCC
TCCATCCCCAGAGGCTTTAAAAGTAGTAGTTTATGGACAGTGATTTACTCCCTAGAAGCC
TGATATGGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTTCGTCAATTGAGATTAAAAGTAAAGGAATAGAGAATGTGCAATACCGTCTGGCTG
GGGGCTGTCCCTGCCCTGAGCTGAGTCCCTTCCCTGGGAGCCAGGCCACCTTTGAATGGG
GTTTAGAAGCAAGATGTGTAGAGATGGGGGATGATGGGGAAGGAGAGCCTGGAGTGAGTG
CCTGCCAAGGTGCTGAGGTGATAGGGGAGAAGGTGGAGTCTTCCCTGTTTTTATCCCCTC
AGGGTCAGTTACATTAGAGGCTGCTTGTTGACTAGTATAGCTCCATGACCCTTTGCTCAA
TCACTGAGATGTGATTTCTTACCCTCTCTTCTCCCCATATTCATTCCCTTCCCAGGGATT
AGTGACGGGGGTGAGGTTCCCCTAATCATGGTAAAGTATTAGCCTTCCACCTCCTCCCTT
TCCTCCCTCTCCCCCGTCCTTCTGTTTTCCTCATTTCTCTACCTTTTCATCACCGATTGC
CTTGTGTCCCTCCAAGTCTGTTGTTGCTGTCCATCCCCAGGCCTTGGGCCCCATAGACAC
TAAACCTCATGCTCTAAAAATAGGAGGAAAGATCCTCTGTTCAGAGTTATCTTTACCCGT
GGAGCACTAAAGCTCAGGGTGATACTAGAGTGAGGATCCCACCAGTTTTACCTGGCTTCC
TCCATCCCCAGAGGCTTTAAAAGTAGTAGTTTATGGACAGTGATTTACTCCCTAGAAGCC
TGATATGGGTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               157-466, - strand, RNAz p=0.999546
               

               
               506-681, - strand, RNAz p=0.999975

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-466, - strand, RNAz p=0.999546
               

               
               506-681, - strand, RNAz p=0.999975

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-731, gnl|bosTau2|chr3 (8030101-8029376)
               

               
               3-731, gnl|Hg17|chr1 (150593366-150592657)
               

               
               3-731, gnl|Mm7|chr3 (90491101-90491836)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-731, gnl|bosTau2|chr3 (8030101-8029376)
               

               
               3-731, gnl|Hg17|chr1 (150593366-150592657)
               

               
               3-731, gnl|Mm7|chr3 (90491101-90491836)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	157-466, - strand, RNAz p=0.999546
	506-681, - strand, RNAz p=0.999975

	3-731, gnl\|bosTau2\|chr3 (8030101-8029376)
	3-731, gnl\|Hg17\|chr1 (150593366-150592657)
	3-731, gnl\|Mm7\|chr3 (90491101-90491836)