Non-Coding RNA Search

Ss1.1-rjca20c_a15.5

Sequence:


               
               ATGTGGAGGCAGGAAAATAAAAGGTTCATGCTAACAGTTCTCTGTAACTGCTGCGCCCGC
ACGCTTCGCGGTATGGGGCAGAGCCTTCGGCGGGCCGGCACCACCTGAGGATCCCAGAAG
CCGCCCCCGCGATGGAAGAGGACCAGGAGCTGGAGAGAAAAATATCTGGATTGAAGACCC
CAATGGCTGAAGGCGAGAGGAAGACAGCCCTGGAAATGGTCCAGGCAGCTGGGACAGATA
GACACTGTGTGACATTTGTTTTGCACGAGGAGGACCATACCCTAGGAAATTCTCTTCGCT
ACATGATCATGAAGAACCCGGAAGTGGAGTTTTGCGGTTACACCACAACCCATCCTTCAG
AGAGCAAAATTAATTTGCGCATACAGACTCGAGGTGCCCTTCCAGCTGTTGAGCCCTTTC
AGAGAGGCCTGACTGAGCTCATGAATGTCTGCCAGCACGTGCTTGACAAGTTTGAGGCCA
GCATAAAGGCATATAAGGATCATAAAGCCGGCAGAAAGGAATCCACCTTCTAGTCCCTTA
TGCCCTGTCCAGGGAGGACTGACCTCTAGGAGACCGTATTGGTGCTGTGACAAAGCCCAG
AAGTAAAAGTTTGCGATGACAACCTGGTCTGTCCTGCAGAAGAGCCTGCCTCTAGCTCTT
AACCATTTCTGCTGTTGGAGTCCCTGCAAGAACCCTCTGTATTCTTCTAATAAATTCCCT
CTTTCATTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGGAGGCAGGAAAATAAAAGGTTCATGCTAACAGTTCTCTGTAACTGCTGCGCCCGC
ACGCTTCGCGGTATGGGGCAGAGCCTTCGGCGGGCCGGCACCACCTGAGGATCCCAGAAG
CCGCCCCCGCGATGGAAGAGGACCAGGAGCTGGAGAGAAAAATATCTGGATTGAAGACCC
CAATGGCTGAAGGCGAGAGGAAGACAGCCCTGGAAATGGTCCAGGCAGCTGGGACAGATA
GACACTGTGTGACATTTGTTTTGCACGAGGAGGACCATACCCTAGGAAATTCTCTTCGCT
ACATGATCATGAAGAACCCGGAAGTGGAGTTTTGCGGTTACACCACAACCCATCCTTCAG
AGAGCAAAATTAATTTGCGCATACAGACTCGAGGTGCCCTTCCAGCTGTTGAGCCCTTTC
AGAGAGGCCTGACTGAGCTCATGAATGTCTGCCAGCACGTGCTTGACAAGTTTGAGGCCA
GCATAAAGGCATATAAGGATCATAAAGCCGGCAGAAAGGAATCCACCTTCTAGTCCCTTA
TGCCCTGTCCAGGGAGGACTGACCTCTAGGAGACCGTATTGGTGCTGTGACAAAGCCCAG
AAGTAAAAGTTTGCGATGACAACCTGGTCTGTCCTGCAGAAGAGCCTGCCTCTAGCTCTT
AACCATTTCTGCTGTTGGAGTCCCTGCAAGAACCCTCTGTATTCTTCTAATAAATTCCCT
CTTTCATTCAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55957689|emb|CAI16933.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55957689|emb|CAI16933.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-240, - strand, RNAz p=0.976399

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.976399

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               48-732, gnl|bosTau2|chr12 (16949836-16950515)
               

               
               48-732, gnl|Hg17|chr13 (27094044-27095586)
               

               
               48-732, gnl|Mm7|chr5 (145971982-145973487)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-732, gnl|bosTau2|chr12 (16949836-16950515)
               

               
               48-732, gnl|Hg17|chr13 (27094044-27095586)
               

               
               48-732, gnl|Mm7|chr5 (145971982-145973487)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

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               ebs (0.473205)
               

               
               cst (0.420109)
               

               
               hlv (0.417769)
               

               
               hea (0.408998)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               eje (0.395335)
               

               
               gul (0.355177)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               che (0.272628)
               

               
               lyg (0.266205)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.473205)
               

               
               cst (0.420109)
               

               
               hlv (0.417769)
               

               
               hea (0.408998)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               eje (0.395335)
               

               
               gul (0.355177)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               che (0.272628)
               

               
               lyg (0.266205)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	48-732, gnl\|bosTau2\|chr12 (16949836-16950515)
	48-732, gnl\|Hg17\|chr13 (27094044-27095586)
	48-732, gnl\|Mm7\|chr5 (145971982-145973487)

	ebs (0.473205)
	cst (0.420109)
	hlv (0.417769)
	hea (0.408998)
	pla (0.401016)
	ute (0.398353)
	eje (0.395335)
	gul (0.355177)
	fhi (0.339155)
	sme (0.305437)
	cag (0.302389)
	che (0.272628)
	lyg (0.266205)
	tes (0.207814)
	col (0.195008)
	sag (0.182715)
	sto (0.179824)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	cki (0.165235)
	nco (0.161734)
	isp (0.150376)
	lin (0.145603)
	lnt (0.142308)
	nmm (0.132802)
	cov (0.132153)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)
	nbm (0.0993246)
	ldo (0.0970026)