Non-Coding RNA Search

Ss1.1-rjca20c_c17.5

Sequence:


               
               CCAGGAGAAATGGGAATCTGGTCTTAGTGGTGGATCATCTAGTAAAGAGTATAACCCATC
TGAATTCACTTTACCGTCACCACTCAGTTTATACCCAAGGACAGTGGGGAGGCGGAGGGG
GACCGGCGGGGGGTGAAGAAGGTTTTTAGAGGATTTCAAACAGGTGGAACCCAGCCATCC
CTGTTCCCAAGGGCCACTTATGACTCCAGGGGTGGTTATAGGATTAACTACCAGTTCATT
TTCAAAATGCTGCTTTGAACTCAGAGGGTTGATACTTTTAATTTGTAATTTTTTGTAAAA
CTTTTTACAAGATAGTAAAGTATTTCACCAGAATACCAGTTTCAATCCGTCCATGGTCTG
ATTTTTATATAATTTAGTGGTGCTTTAGAAACTTTGTTTTTGTTGTTTATGAGCAAGACA
GCTCAATCCTTTTTCGCCTGTATCTACCTAAGACCAATGTGAACCTTTGTATTTTTGCTC
CTAATTTTGGACTCAGTGAAAGTGTACTGTTTACATGTACAGATGCCCCGGTCCCTGTGT
GTCCTGCAAGACTCGCTCTTGAGGAGGAAGGTGCACCTCACTAAGCTCATCTGCTTAGCA
AAGCCACAAAACAAAAACCTCTCACTTTTTACCTGTTTCCACCTAAAAAGAAAAATAAAA
AACCTACACCACACTGAACTCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGAGAAATGGGAATCTGGTCTTAGTGGTGGATCATCTAGTAAAGAGTATAACCCATC
TGAATTCACTTTACCGTCACCACTCAGTTTATACCCAAGGACAGTGGGGAGGCGGAGGGG
GACCGGCGGGGGGTGAAGAAGGTTTTTAGAGGATTTCAAACAGGTGGAACCCAGCCATCC
CTGTTCCCAAGGGCCACTTATGACTCCAGGGGTGGTTATAGGATTAACTACCAGTTCATT
TTCAAAATGCTGCTTTGAACTCAGAGGGTTGATACTTTTAATTTGTAATTTTTTGTAAAA
CTTTTTACAAGATAGTAAAGTATTTCACCAGAATACCAGTTTCAATCCGTCCATGGTCTG
ATTTTTATATAATTTAGTGGTGCTTTAGAAACTTTGTTTTTGTTGTTTATGAGCAAGACA
GCTCAATCCTTTTTCGCCTGTATCTACCTAAGACCAATGTGAACCTTTGTATTTTTGCTC
CTAATTTTGGACTCAGTGAAAGTGTACTGTTTACATGTACAGATGCCCCGGTCCCTGTGT
GTCCTGCAAGACTCGCTCTTGAGGAGGAAGGTGCACCTCACTAAGCTCATCTGCTTAGCA
AAGCCACAAAACAAAAACCTCTCACTTTTTACCTGTTTCCACCTAAAAAGAAAAATAAAA
AACCTACACCACACTGAACTCAGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-684, gnl|bosTau2|chr13 (42751645-42752336)
               

               
               3-684, gnl|Hg17|chr20 (30496124-30495421)
               

               
               3-684, gnl|Mm7|chr2 (153149821-153149143)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-684, gnl|bosTau2|chr13 (42751645-42752336)
               

               
               3-684, gnl|Hg17|chr20 (30496124-30495421)
               

               
               3-684, gnl|Mm7|chr2 (153149821-153149143)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               jca (0.22792)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	3-684, gnl\|bosTau2\|chr13 (42751645-42752336)
	3-684, gnl\|Hg17\|chr20 (30496124-30495421)
	3-684, gnl\|Mm7\|chr2 (153149821-153149143)

	jca (0.22792)
	mcp (0.170648)
	nco (0.161734)
	pgl (0.118483)
	cty (0.10408)