Ss1.1-rjca20c_e21.5.5
|
TTCTCTCTTTTGCTCAGGCCCGTGGCGCCGGCAGGATGGGCAAGTGTCGCGGTCTTCGTA
CTGCCAGGAAGCTCCGTAGCCACCGACGGGACCAGAAGTGGCACGATAAACAGTACAAGA
AAGCCCATTTGGGCACAGCCCTGAAGGCCAACCCTTTCGGAGGCGCTTCTCATGCCAAGG
GAATTGTGCTTGAAAAAGTAGGGGTTGAAGCCAAACAGCCAAATTCTGCCATCAGGAAGT
GTGTCAGGGTTCAGCTAATCAAGAATGGGAAAAAAATTACAGCCTTTGTACCCAATGATG
GTTGTTTGAACTTCATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCGCAAAG
GTCATGCTGTTGGTGACATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTCT
CTCTTTTGGCCTTATACAAAGGCAAGAAGGAGAGACCAAGATCATAAGTTTTGATGGTAA
AAGCAGGATAGTAATAAATTTTCATATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCTCTCTTTTGCTCAGGCCCGTGGCGCCGGCAGGATGGGCAAGTGTCGCGGTCTTCGTA
CTGCCAGGAAGCTCCGTAGCCACCGACGGGACCAGAAGTGGCACGATAAACAGTACAAGA
AAGCCCATTTGGGCACAGCCCTGAAGGCCAACCCTTTCGGAGGCGCTTCTCATGCCAAGG
GAATTGTGCTTGAAAAAGTAGGGGTTGAAGCCAAACAGCCAAATTCTGCCATCAGGAAGT
GTGTCAGGGTTCAGCTAATCAAGAATGGGAAAAAAATTACAGCCTTTGTACCCAATGATG
GTTGTTTGAACTTCATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCGCAAAG
GTCATGCTGTTGGTGACATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTCT
CTCTTTTGGCCTTATACAAAGGCAAGAAGGAGAGACCAAGATCATAAGTTTTGATGGTAA
AAGCAGGATAGTAATAAATTTTCATATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|17530965|ref|NP_511172.1| |
Protein identifier
|
gi|17530965|ref|NP_511172.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
5-534, gnl|bosTau2|chr6 (47482909-47483428) |
|
5-534, gnl|Hg17|chr8 (98946428-98946949) |
|
5-534, gnl|Mm7|chr8 (24211007-24211533) |
| |
|
6-524, gnl|bosTau2|chr12 (37829480-37828963) |
|
6-524, gnl|Hg17|chr8 (98946429-98946866) |
|
6-524, gnl|Mm7|chr8 (24211008-24211523) |
| |
|
391-521, gnl|bosTau2|chr11 (32236118-32235994) |
|
391-521, gnl|canFam2|chr10 (39308410-39308318) |
|
391-521, gnl|echTel1|scaffold_310985 (12765-12684) |
|
391-521, gnl|hg17|chr2 (107682219-107682311) |
|
391-521, gnl|monDom2|scaffold_11 (27097293-27097377) |
|
391-521, gnl|panTro1|chr12_random (4707008-4707100) |
|
391-521, gnl|rheMac2|chr13 (107307988-107308080) |
|
391-521, gnl|rn3|chrUn (11732433-11732344) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-534, gnl|bosTau2|chr6 (47482909-47483428) |
|
5-534, gnl|Hg17|chr8 (98946428-98946949) |
|
5-534, gnl|Mm7|chr8 (24211007-24211533) |
| |
|
6-524, gnl|bosTau2|chr12 (37829480-37828963) |
|
6-524, gnl|Hg17|chr8 (98946429-98946866) |
|
6-524, gnl|Mm7|chr8 (24211008-24211523) |
| |
|
391-521, gnl|bosTau2|chr11 (32236118-32235994) |
|
391-521, gnl|canFam2|chr10 (39308410-39308318) |
|
391-521, gnl|echTel1|scaffold_310985 (12765-12684) |
|
391-521, gnl|hg17|chr2 (107682219-107682311) |
|
391-521, gnl|monDom2|scaffold_11 (27097293-27097377) |
|
391-521, gnl|panTro1|chr12_random (4707008-4707100) |
|
391-521, gnl|rheMac2|chr13 (107307988-107308080) |
|
391-521, gnl|rn3|chrUn (11732433-11732344) |
|
cut (8.6661) |
|
cje (7.27032) |
|
che (6.13413) |
|
cki (5.94845) |
|
cst (5.46142) |
|
csk (4.78536) |
|
eje (4.24985) |
|
ova (3.74483) |
|
elu (3.46821) |
|
eep (3.18667) |
|
nca (3.1481) |
|
col (3.12012) |
|
ssp (3.11695) |
|
lnt (2.98847) |
|
cmu (2.98229) |
|
nlu (2.87522) |
|
sme (2.74893) |
|
nco (2.58774) |
|
med (2.55754) |
|
sto (2.51753) |
|
jca (2.50712) |
|
fce (2.44432) |
|
aor (2.34329) |
|
ton (2.2815) |
|
cag (2.26792) |
|
rec (2.24991) |
|
cly (2.05091) |
|
nmm (1.99203) |
|
cov (1.98229) |
|
cga (1.95367) |
|
fty (1.93424) |
|
ill (1.93152) |
|
nbm (1.78784) |
|
jej (1.78059) |
|
nms (1.71086) |
|
mcp (1.70648) |
|
eru (1.68067) |
|
vin (1.66279) |
|
nje (1.6592) |
|
csp (1.61186) |
|
ecc (1.61049) |
|
eli (1.51814) |
|
eye (1.36402) |
|
mas (1.26183) |
|
hea (1.22699) |
|
fli (1.21729) |
|
mgp (1.1534) |
|
thg (1.14112) |
|
mga (1.12144) |
|
fhi (1.01747) |
|
pty (0.999001) |
|
cbe (0.956938) |
|
nep (0.919625) |
|
ece (0.917221) |
|
bfe (0.899146) |
|
duo (0.864006) |
|
hyp (0.85702) |
|
amn (0.835422) |
|
cli (0.764059) |
|
hlv (0.696282) |
|
ebs (0.591506) |
|
cte (0.58548) |
|
sag (0.548145) |
|
pro (0.512033) |
|
ese (0.506009) |
|
pgl (0.473934) |
|
isp (0.451128) |
|
liv (0.438853) |
|
lyg (0.399308) |
|
ute (0.398353) |
|
fcc (0.39557) |
|
kid (0.389206) |
|
mgm (0.360685) |
|
clu (0.358938) |
|
fbs (0.350693) |
|
fat (0.294855) |
|
spl (0.286369) |
|
spc (0.226732) |
|
ldo (0.194005) |
|
gul (0.177588) |
|
sin (0.174948) |
|
fco (0.157208) |
|
ski (0.146735) |
|
pla (0.133672) |
|
sug (0.127291) |
|
bla (0.124347) |
|
cut (8.6661) |
|
cje (7.27032) |
|
che (6.13413) |
|
cki (5.94845) |
|
cst (5.46142) |
|
csk (4.78536) |
|
eje (4.24985) |
|
ova (3.74483) |
|
elu (3.46821) |
|
eep (3.18667) |
|
nca (3.1481) |
|
col (3.12012) |
|
ssp (3.11695) |
|
lnt (2.98847) |
|
cmu (2.98229) |
|
nlu (2.87522) |
|
sme (2.74893) |
|
nco (2.58774) |
|
med (2.55754) |
|
sto (2.51753) |
|
jca (2.50712) |
|
fce (2.44432) |
|
aor (2.34329) |
|
ton (2.2815) |
|
cag (2.26792) |
|
rec (2.24991) |
|
cly (2.05091) |
|
nmm (1.99203) |
|
cov (1.98229) |
|
cga (1.95367) |
|
fty (1.93424) |
|
ill (1.93152) |
|
nbm (1.78784) |
|
jej (1.78059) |
|
nms (1.71086) |
|
mcp (1.70648) |
|
eru (1.68067) |
|
vin (1.66279) |
|
nje (1.6592) |
|
csp (1.61186) |
|
ecc (1.61049) |
|
eli (1.51814) |
|
eye (1.36402) |
|
mas (1.26183) |
|
hea (1.22699) |
|
fli (1.21729) |
|
mgp (1.1534) |
|
thg (1.14112) |
|
mga (1.12144) |
|
fhi (1.01747) |
|
pty (0.999001) |
|
cbe (0.956938) |
|
nep (0.919625) |
|
ece (0.917221) |
|
bfe (0.899146) |
|
duo (0.864006) |
|
hyp (0.85702) |
|
amn (0.835422) |
|
cli (0.764059) |
|
hlv (0.696282) |
|
ebs (0.591506) |
|
cte (0.58548) |
|
sag (0.548145) |
|
pro (0.512033) |
|
ese (0.506009) |
|
pgl (0.473934) |
|
isp (0.451128) |
|
liv (0.438853) |
|
lyg (0.399308) |
|
ute (0.398353) |
|
fcc (0.39557) |
|
kid (0.389206) |
|
mgm (0.360685) |
|
clu (0.358938) |
|
fbs (0.350693) |
|
fat (0.294855) |
|
spl (0.286369) |
|
spc (0.226732) |
|
ldo (0.194005) |
|
gul (0.177588) |
|
sin (0.174948) |
|
fco (0.157208) |
|
ski (0.146735) |
|
pla (0.133672) |
|
sug (0.127291) |
|
bla (0.124347) |
