Non-Coding RNA Search

Ss1.1-rjca20c_h15.5

Sequence:


               
               TTTTTTCAAATGTCATGGTTTTTATTTTATTTTTCAATTTTTATTTTTGGGTTTTCTTAC
AAAGGTTGACATTTTCCACAACAGGTGTTAGAATGTTGAAAAAAATTCCAAATCTTTGGG
GGAGGGGAAGAGGGACAGGGAACGAATTAATTGTATTGCACGATGCTCTGATCAATCCTT
CTCCTTCTCTTTTGCCCACAATTTAAGCAAGTAGATGTGCAGAAGAAATGGAATGATTCA
GCTTTCAGTTAAAAAAGAAGAAAAAGAAATGGCAAAGAGAGAAATTTTCCTCGTGCCGAA
TTCGGCACGAGGGGACGCCGCTGTGGTGCGGCCCGGCTTCCTGAGCGCGGCCGAAGAGGA
GACACTGAGCCGCGAGTTGGAACCTGAGCTACGCCGTCGCCGATACGAATACGACCACTG
GGACGCGTTCTGCGGATCCACCATTGCCGGCCTGTCCCTGCTGTCTCCCAGTGTCATGCG
GCTGGTGCACACTCAGGAGCCAGGGGAGTGGCTGGAACTCCTGCTGGAGCCAGGCTCCCT
CTACATTCTTAGGGACTCGGCCCGTTACGACTTCTCCCATGAGATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCAAATGTCATGGTTTTTATTTTATTTTTCAATTTTTATTTTTGGGTTTTCTTAC
AAAGGTTGACATTTTCCACAACAGGTGTTAGAATGTTGAAAAAAATTCCAAATCTTTGGG
GGAGGGGAAGAGGGACAGGGAACGAATTAATTGTATTGCACGATGCTCTGATCAATCCTT
CTCCTTCTCTTTTGCCCACAATTTAAGCAAGTAGATGTGCAGAAGAAATGGAATGATTCA
GCTTTCAGTTAAAAAAGAAGAAAAAGAAATGGCAAAGAGAGAAATTTTCCTCGTGCCGAA
TTCGGCACGAGGGGACGCCGCTGTGGTGCGGCCCGGCTTCCTGAGCGCGGCCGAAGAGGA
GACACTGAGCCGCGAGTTGGAACCTGAGCTACGCCGTCGCCGATACGAATACGACCACTG
GGACGCGTTCTGCGGATCCACCATTGCCGGCCTGTCCCTGCTGTCTCCCAGTGTCATGCG
GCTGGTGCACACTCAGGAGCCAGGGGAGTGGCTGGAACTCCTGCTGGAGCCAGGCTCCCT
CTACATTCTTAGGGACTCGGCCCGTTACGACTTCTCCCATGAGATCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9CY41_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9CY41_MOUSE

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               25-287, gnl|bosTau2|chr4 (2991572-2991310)
               

               
               25-287, gnl|Hg17|chr7 (93704651-93704393)
               

               
               25-287, gnl|Mm7|chr6 (4493880-4493585)
               


               
               427-553, gnl|bosTau2|chr7 (13982704-13982578)
               

               
               427-553, gnl|Hg17|chr19 (6325475-6325601)
               

               
               427-553, gnl|Mm7|chr17 (55209800-55209926)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-287, gnl|bosTau2|chr4 (2991572-2991310)
               

               
               25-287, gnl|Hg17|chr7 (93704651-93704393)
               

               
               25-287, gnl|Mm7|chr6 (4493880-4493585)
               


               
               427-553, gnl|bosTau2|chr7 (13982704-13982578)
               

               
               427-553, gnl|Hg17|chr19 (6325475-6325601)
               

               
               427-553, gnl|Mm7|chr17 (55209800-55209926)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               jca (0.11396)

	25-287, gnl\|bosTau2\|chr4 (2991572-2991310)
	25-287, gnl\|Hg17\|chr7 (93704651-93704393)
	25-287, gnl\|Mm7\|chr6 (4493880-4493585)

	427-553, gnl\|bosTau2\|chr7 (13982704-13982578)
	427-553, gnl\|Hg17\|chr19 (6325475-6325601)
	427-553, gnl\|Mm7\|chr17 (55209800-55209926)