Non-Coding RNA Search

Ss1.1-rjca20c_k3.5

Sequence:


               
               TGCGTCCATGGAATGATGTCTCTGGAAGTGCCACGACTACTGAAGCTCAGCCTGCCTTTC
ACTTTTCTGTCCTCAGAGGCCTGCACACTCTCCAGCACCTTTTTCCTGAGCATGCTTGCC
TGACCCCCAGCTCTCTTTCCCACTCTCCCCACTCCTGTACCAGCTGCCTCCTTTCACTGT
TGAACATGGGTCAGATTAGGGGAACCCTTGCTTGTTTATTTTTAAGAAGGGAAGTCCTCT
GTAGGGTGCATAGTGCCATTCTAGGGGGATGTTGGCTGCAGGAAGACAACAACCCCTGAG
AGTGACTGATCCCTGCAAGCTGGCTCCTTTCCACATGTGGTTTCTTGCAACCCAGGAGGG
TGATTTCCTGCCTTTCCTTCAGAGCTGACTCTCAGGGTACCTAAACTGGGAGACATATGC
TGATGCCCATTTGCCTTCTGCTTTGCTGACTTGATTTGCTTGGGAATCTAGATGATCCCA
CTAAATCTCTCTTCATTCCTACTTGTGGAGGTTCATGAACTTTTTAAATTTCAAACCATC
TTGAAAAACATTGCCGGCCTCACTAAGTGCATAGTGTGACAGCAGTTTTTTCTCTTCATC
TGTATCTGGATTTTTTTTCTCTCCCATATGCCACTGCAGGAAGCTGTCTGTACCTCACTA
GTTCTGTATTTTACTGGACACTGAGGCATCAAGACAGCTCTGGCTCTTAGCAGAAGCCAA
CCTGCTTTGCACACAGCATTGAGATAAAGATTCTTTATTATGGAATAAGTGAATTTCCCT
TCTAGAATGTTGGGGATGTTGAAGGGATAATCATTCACATCCAGGGAAATATTAATTAGT
GGTGTGGCTGACTCTGCACCTTTTCTCAGGAATCCTACATAAGTTACCTGCCTCTTCCAC
CACCAGGAGGCTTCCCGTGTCCTACTTTTCTCTTGAATTTTAGAGGGACAGATATTCAGT
GGCCAAAGGCACTATCTTATGATCTCAGGGAAAAATTTTAACTGCTTGACAGTGCCTAAC
CTTGATTAATGGGCATAGAAATTCAGAATATAAAGCTGGAAGCAGGGAATTTTTAAAATG
GGATACCTCAAACTGCATGTTTTCTCTCTGGAAAGAGAAGTGTGTTGAATACCAAATAAA
TACCAAGTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGTCCATGGAATGATGTCTCTGGAAGTGCCACGACTACTGAAGCTCAGCCTGCCTTTC
ACTTTTCTGTCCTCAGAGGCCTGCACACTCTCCAGCACCTTTTTCCTGAGCATGCTTGCC
TGACCCCCAGCTCTCTTTCCCACTCTCCCCACTCCTGTACCAGCTGCCTCCTTTCACTGT
TGAACATGGGTCAGATTAGGGGAACCCTTGCTTGTTTATTTTTAAGAAGGGAAGTCCTCT
GTAGGGTGCATAGTGCCATTCTAGGGGGATGTTGGCTGCAGGAAGACAACAACCCCTGAG
AGTGACTGATCCCTGCAAGCTGGCTCCTTTCCACATGTGGTTTCTTGCAACCCAGGAGGG
TGATTTCCTGCCTTTCCTTCAGAGCTGACTCTCAGGGTACCTAAACTGGGAGACATATGC
TGATGCCCATTTGCCTTCTGCTTTGCTGACTTGATTTGCTTGGGAATCTAGATGATCCCA
CTAAATCTCTCTTCATTCCTACTTGTGGAGGTTCATGAACTTTTTAAATTTCAAACCATC
TTGAAAAACATTGCCGGCCTCACTAAGTGCATAGTGTGACAGCAGTTTTTTCTCTTCATC
TGTATCTGGATTTTTTTTCTCTCCCATATGCCACTGCAGGAAGCTGTCTGTACCTCACTA
GTTCTGTATTTTACTGGACACTGAGGCATCAAGACAGCTCTGGCTCTTAGCAGAAGCCAA
CCTGCTTTGCACACAGCATTGAGATAAAGATTCTTTATTATGGAATAAGTGAATTTCCCT
TCTAGAATGTTGGGGATGTTGAAGGGATAATCATTCACATCCAGGGAAATATTAATTAGT
GGTGTGGCTGACTCTGCACCTTTTCTCAGGAATCCTACATAAGTTACCTGCCTCTTCCAC
CACCAGGAGGCTTCCCGTGTCCTACTTTTCTCTTGAATTTTAGAGGGACAGATATTCAGT
GGCCAAAGGCACTATCTTATGATCTCAGGGAAAAATTTTAACTGCTTGACAGTGCCTAAC
CTTGATTAATGGGCATAGAAATTCAGAATATAAAGCTGGAAGCAGGGAATTTTTAAAATG
GGATACCTCAAACTGCATGTTTTCTCTCTGGAAAGAGAAGTGTGTTGAATACCAAATAAA
TACCAAGTGACT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-218, gnl|bosTau2|chr19 (2087773-2087557)
               

               
               1-218, gnl|Hg17|chr17 (51208480-51208765)
               

               
               1-218, gnl|Mm7|chr11 (90093711-90093506)
               


               
               249-1152, gnl|bosTau2|chr19 (2087487-2086563)
               

               
               249-1152, gnl|Hg17|chr17 (51208807-51209730)
               

               
               249-1152, gnl|Mm7|chr11 (90093461-90092470)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-218, gnl|bosTau2|chr19 (2087773-2087557)
               

               
               1-218, gnl|Hg17|chr17 (51208480-51208765)
               

               
               1-218, gnl|Mm7|chr11 (90093711-90093506)
               


               
               249-1152, gnl|bosTau2|chr19 (2087487-2086563)
               

               
               249-1152, gnl|Hg17|chr17 (51208807-51209730)
               

               
               249-1152, gnl|Mm7|chr11 (90093461-90092470)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               tbr (0.308356)
               

               
               lun (0.300978)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               lun (0.300978)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	1-218, gnl\|bosTau2\|chr19 (2087773-2087557)
	1-218, gnl\|Hg17\|chr17 (51208480-51208765)
	1-218, gnl\|Mm7\|chr11 (90093711-90093506)

	249-1152, gnl\|bosTau2\|chr19 (2087487-2086563)
	249-1152, gnl\|Hg17\|chr17 (51208807-51209730)
	249-1152, gnl\|Mm7\|chr11 (90093461-90092470)

	tbr (0.308356)
	lun (0.300978)
	hea (0.204499)
	fty (0.17584)
	fbs (0.175346)
	fhi (0.169578)
	cag (0.151194)
	liv (0.146284)
	spl (0.143184)
	eep (0.122564)
	ebs (0.118301)
	jca (0.11396)