Non-Coding RNA Search

Ss1.1-rjca20c_k8.5

Sequence:


               
               GATATCTATATTCAGCTCTTTCTGCAGGTTGGAGTTAGCATAGAGTTGGAAAATCAGCTT
TGGCTTTCTTTCCTGACTGTCTCTGATTTCCTTTAGTGTTCTCCCTTTTCTGGTCATCAG
CTCTCAACAACTCTGCCACTCTTGTGTCCTAAGGTAATAAGAAGTAGGAAACGAAACCTT
GCAAAGTGGAGCAAGAAAAGTTATCGGTTACCGTATCAGAGTCAAATGTCTTGGGTGACA
CTAAGGAGGACATGGGCAAGGTGATACCAGAGTGCTTTATCTTGTGATGCTGATACAGTA
GCAGCCTCTCAAACATACAACCAGGTTGGATTTCTCACAAGTTTCTCACCTAGTTTTGAA
TCCTATCCCATTGGTTTCTGCAGGAGAAAAAAAAAAAAAAATTAAATGGTTTTTAAGTTT
GTTTTGGTTGGGAAAAATCTTATGGGGAATATACTGCATAGTATCAGGGGCTCAGCTCCC
CCAAACAGAGCCAACAAATACCAAAATGAGTAAACTGGGAAGCTTTTTCTCTCTTTCTGT
CTTCATCCCAGATCAAAGAATCCCGAGTTAGGATCTGGATGAAGGATAAGCCCCTGAATT
GTCGATGGGCACACCCCACACACTGACCCAGCATCTGAACTTGCTTAACAGGGAGCCGGG
GCTAAACTGCTTCACCCTGCCTGAGAACCAGGGAGCACTGCATTTCTCCACAGGGTGGAG
GAGAAGAGGCAGAATAAACCAAGCCTGGGACACCTCCCTCCTGTCTAGGTGTACTCATTC
TCCTGTTCCAAAAGACGGCAAGGACATGAAGTCAACTTCTACCTATCTTCTGCTGCTGGT
GTCTTGTGTATTCTTAGTTTGACCTGATTCCTCTTCTGTCCTTTGGCTTCATGTTAGGGG
TCCTTGGTCAAAACCTGCTCTGATGTACATGAAGATTCCAGGTTCAAAATCAGTGTCTTA
AAACAAGTATTGTAGAGGTGGGGGAGGGGTTAAGCAGGATATAACTGCCAAACTTAAGAT
TGGTGACTCTTAGAAAGATTTACCTTAAGGCCTGGGTCTGAAAATTTAGTGCAGCACTCT
TGTGAATTCTCAAAAGAATCTTTCCAGGGAGCCAGTGAGTCACAGTATCCAGTTGAGTCA
CTTAAAGCAGACGCCAGTATAGGAAACTCATTATTCACAATCCCTAGGTAATCTCATATT
TGTTTACCTTTTTAAAAATCCCCTTCCCTCCCTTATTTCTACCCTTGAGTTAGTTTTTTG
AGGGGTAGGAAGTATTTAACATCTCAGAAGCTAGGTTGGGAAACATGCTCAGCTGTAAAA
GCTGAGCTTTAAATTTTGAGTTTTAAAAATGTACATCAGGAGCAGTTGGGAGGGGCTTTT
CTAAAAAAAAAGTAATCTTTTAAATTTGATTTTCTGTGTGTATGGCCGTTCTGTAAATAC
TTTGGGGTTTTTCATTTTTTTGAAAGTAGACAAAATCTGTGGGATTTTTTTTCCCGAAAC
ATTACAGAAACCTGTTTATTTACATGCAAATAAATTTCTTTGATAAAAAGCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATCTATATTCAGCTCTTTCTGCAGGTTGGAGTTAGCATAGAGTTGGAAAATCAGCTT
TGGCTTTCTTTCCTGACTGTCTCTGATTTCCTTTAGTGTTCTCCCTTTTCTGGTCATCAG
CTCTCAACAACTCTGCCACTCTTGTGTCCTAAGGTAATAAGAAGTAGGAAACGAAACCTT
GCAAAGTGGAGCAAGAAAAGTTATCGGTTACCGTATCAGAGTCAAATGTCTTGGGTGACA
CTAAGGAGGACATGGGCAAGGTGATACCAGAGTGCTTTATCTTGTGATGCTGATACAGTA
GCAGCCTCTCAAACATACAACCAGGTTGGATTTCTCACAAGTTTCTCACCTAGTTTTGAA
TCCTATCCCATTGGTTTCTGCAGGAGAAAAAAAAAAAAAAATTAAATGGTTTTTAAGTTT
GTTTTGGTTGGGAAAAATCTTATGGGGAATATACTGCATAGTATCAGGGGCTCAGCTCCC
CCAAACAGAGCCAACAAATACCAAAATGAGTAAACTGGGAAGCTTTTTCTCTCTTTCTGT
CTTCATCCCAGATCAAAGAATCCCGAGTTAGGATCTGGATGAAGGATAAGCCCCTGAATT
GTCGATGGGCACACCCCACACACTGACCCAGCATCTGAACTTGCTTAACAGGGAGCCGGG
GCTAAACTGCTTCACCCTGCCTGAGAACCAGGGAGCACTGCATTTCTCCACAGGGTGGAG
GAGAAGAGGCAGAATAAACCAAGCCTGGGACACCTCCCTCCTGTCTAGGTGTACTCATTC
TCCTGTTCCAAAAGACGGCAAGGACATGAAGTCAACTTCTACCTATCTTCTGCTGCTGGT
GTCTTGTGTATTCTTAGTTTGACCTGATTCCTCTTCTGTCCTTTGGCTTCATGTTAGGGG
TCCTTGGTCAAAACCTGCTCTGATGTACATGAAGATTCCAGGTTCAAAATCAGTGTCTTA
AAACAAGTATTGTAGAGGTGGGGGAGGGGTTAAGCAGGATATAACTGCCAAACTTAAGAT
TGGTGACTCTTAGAAAGATTTACCTTAAGGCCTGGGTCTGAAAATTTAGTGCAGCACTCT
TGTGAATTCTCAAAAGAATCTTTCCAGGGAGCCAGTGAGTCACAGTATCCAGTTGAGTCA
CTTAAAGCAGACGCCAGTATAGGAAACTCATTATTCACAATCCCTAGGTAATCTCATATT
TGTTTACCTTTTTAAAAATCCCCTTCCCTCCCTTATTTCTACCCTTGAGTTAGTTTTTTG
AGGGGTAGGAAGTATTTAACATCTCAGAAGCTAGGTTGGGAAACATGCTCAGCTGTAAAA
GCTGAGCTTTAAATTTTGAGTTTTAAAAATGTACATCAGGAGCAGTTGGGAGGGGCTTTT
CTAAAAAAAAAGTAATCTTTTAAATTTGATTTTCTGTGTGTATGGCCGTTCTGTAAATAC
TTTGGGGTTTTTCATTTTTTTGAAAGTAGACAAAATCTGTGGGATTTTTTTTCCCGAAAC
ATTACAGAAACCTGTTTATTTACATGCAAATAAATTTCTTTGATAAAAAGCAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               128-246, - strand, RNAz p=0.540538
               

               
               641-760, - strand, RNAz p=0.959786
               

               
               1191-1424, - strand, RNAz p=0.996902

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-246, - strand, RNAz p=0.540538
               

               
               641-760, - strand, RNAz p=0.959786
               

               
               1191-1424, - strand, RNAz p=0.996902

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-1552, gnl|bosTau2|chr19 (32926052-32924565)
               

               
               50-1552, gnl|Hg17|chr17 (34815580-34814065)
               

               
               50-1552, gnl|Mm7|chr11 (98262690-98261194)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-1552, gnl|bosTau2|chr19 (32926052-32924565)
               

               
               50-1552, gnl|Hg17|chr17 (34815580-34814065)
               

               
               50-1552, gnl|Mm7|chr11 (98262690-98261194)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cbl (0.688784)
               

               
               amn (0.417711)
               

               
               bla (0.373042)
               

               
               fty (0.351679)
               

               
               nbm (0.198649)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.688784)
               

               
               amn (0.417711)
               

               
               bla (0.373042)
               

               
               fty (0.351679)
               

               
               nbm (0.198649)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	128-246, - strand, RNAz p=0.540538
	641-760, - strand, RNAz p=0.959786
	1191-1424, - strand, RNAz p=0.996902

	50-1552, gnl\|bosTau2\|chr19 (32926052-32924565)
	50-1552, gnl\|Hg17\|chr17 (34815580-34814065)
	50-1552, gnl\|Mm7\|chr11 (98262690-98261194)

	cbl (0.688784)
	amn (0.417711)
	bla (0.373042)
	fty (0.351679)
	nbm (0.198649)
	fbs (0.175346)
	isp (0.150376)
	spl (0.143184)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)