Non-Coding RNA Search

Ss1.1-rjca20c_m5.5

Sequence:


               
               ACAGGTGTGAAGCCCAAGAAACCCATCCAGACCAAGTTTAGAATGCCCCTCTTAAACTGG
GTGGCCCTNGAAACCCAACCAGATCACAGGCACGGTCTTCACTGAGATCAATGACGAGAA
GGTGCTGCGGGAGCTGGACATGAGTGACTTTGAGGAGCAGTTCAAGACAAAGTCCCAAGG
TCCCAGCCTAGACCTTACTGCTCTCAAGAGTAAGGCAGCCCAAAAGGCCCCCAGCAAAGC
CACACTCATCGAGGCCAACCGGGCCAAGAACCTGGCCATCACCCTGCGCAAGGGCAACCT
GGGAGCTGACCGCATCTGCCAGGCCATTGAGACGTATGACCTGCAGGCCCTTGGCCTAGA
CTTCTTGGAGCTGCTGACCCGCTTCCTGCCTACGGAGTATGAGCGTAGCCTCATCACCCG
GTTCGAGCAGGAGCAGCGGCCCATAGAGGAGCTGTCAGAGGAGGACCGCTTCATGCTGCG
CTTCAGCCGTATCCCCCGCCTGCCCGAGCGCATGAACACGCTTATCTTCCTGGGCAACTT
CCCAGACACTGCCCAGCTGCTCATGCCGCAACTGAATGCTGTCATTGCGGCTTCAATGTC
CATCAAGTCCTCAGACAGACTCCGCCAGATCCTTGAGATCGTCCTGGCTTTCGGCAACTA
CATGAACAGCAGCAAGCGTGGAGCAGCTTATGGCTTCCGGCTGCAGAGTCTGGATGCGCT
GCTGGAGATGAAATCGACTGATCGAAAGCAGACGCTGCTGCACTACTTGGTGAAGGTCAT
TGCTGAGAAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGGTGTGAAGCCCAAGAAACCCATCCAGACCAAGTTTAGAATGCCCCTCTTAAACTGG
GTGGCCCTNGAAACCCAACCAGATCACAGGCACGGTCTTCACTGAGATCAATGACGAGAA
GGTGCTGCGGGAGCTGGACATGAGTGACTTTGAGGAGCAGTTCAAGACAAAGTCCCAAGG
TCCCAGCCTAGACCTTACTGCTCTCAAGAGTAAGGCAGCCCAAAAGGCCCCCAGCAAAGC
CACACTCATCGAGGCCAACCGGGCCAAGAACCTGGCCATCACCCTGCGCAAGGGCAACCT
GGGAGCTGACCGCATCTGCCAGGCCATTGAGACGTATGACCTGCAGGCCCTTGGCCTAGA
CTTCTTGGAGCTGCTGACCCGCTTCCTGCCTACGGAGTATGAGCGTAGCCTCATCACCCG
GTTCGAGCAGGAGCAGCGGCCCATAGAGGAGCTGTCAGAGGAGGACCGCTTCATGCTGCG
CTTCAGCCGTATCCCCCGCCTGCCCGAGCGCATGAACACGCTTATCTTCCTGGGCAACTT
CCCAGACACTGCCCAGCTGCTCATGCCGCAACTGAATGCTGTCATTGCGGCTTCAATGTC
CATCAAGTCCTCAGACAGACTCCGCCAGATCCTTGAGATCGTCCTGGCTTTCGGCAACTA
CATGAACAGCAGCAAGCGTGGAGCAGCTTATGGCTTCCGGCTGCAGAGTCTGGATGCGCT
GCTGGAGATGAAATCGACTGATCGAAAGCAGACGCTGCTGCACTACTTGGTGAAGGTCAT
TGCTGAGAAGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32425708|gb|AAH01710.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32425708|gb|AAH01710.2|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-131, gnl|bosTau2|chr19 (37132248-37132120)
               

               
               2-131, gnl|Hg17|chr17 (40675488-40675616)
               

               
               2-131, gnl|Mm7|chr11 (103302966-103303094)
               


               
               334-568, gnl|bosTau2|chr19 (37130822-37130588)
               

               
               334-568, gnl|Hg17|chr17 (40676941-40677175)
               

               
               334-568, gnl|Mm7|chr11 (103304300-103304534)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-131, gnl|bosTau2|chr19 (37132248-37132120)
               

               
               2-131, gnl|Hg17|chr17 (40675488-40675616)
               

               
               2-131, gnl|Mm7|chr11 (103302966-103303094)
               


               
               334-568, gnl|bosTau2|chr19 (37130822-37130588)
               

               
               334-568, gnl|Hg17|chr17 (40676941-40677175)
               

               
               334-568, gnl|Mm7|chr11 (103304300-103304534)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	2-131, gnl\|bosTau2\|chr19 (37132248-37132120)
	2-131, gnl\|Hg17\|chr17 (40675488-40675616)
	2-131, gnl\|Mm7\|chr11 (103302966-103303094)

	334-568, gnl\|bosTau2\|chr19 (37130822-37130588)
	334-568, gnl\|Hg17\|chr17 (40676941-40677175)
	334-568, gnl\|Mm7\|chr11 (103304300-103304534)