Ss1.1-rjca21c_b1.5
|
ACAACGGCAGTGACAGCAACTGGACAAGCAGGCTCCCAGCTGTCCAGCCCTTCAGATCTG
CCTGAGAGGACCTACCTGGGTTGCCACCGACCAGCCCTTGCCCCAGGATGGGGACCACGT
CCAGAGCAGCCTTGGTCTTGGCCTATTTGGCTGTTGCTTCTGTAGTCCCAGAGGGAGTTT
CCAAGGCTCCAGGGCAAAGGGAGCTGGGGGCAGAGCACCTCCTTCAAGAAGCTGGCTATG
CTGCACCCCCTTCCCCACCCCTGAGCCACACTCTCCCCAGGGATCCCCCTGACACTTCTC
AGCAGAGCCCTCACTTTGAGGGACAGAGTGAAGTGCAGCCCTCTTCCTCTCAGGAAGCCA
TCCCATTCCAGCAGGAGGAGCTGACCCCTGCCCAACTCCCTGCGGAAAAGAAAGGGGATC
CTCCTCTCCTTCAAGAAACTGTGCCCCTCCAAAAAGAGCAGTCCCCTCCCAAGCTCCCTA
CAGAACAGAAGGAAAAAAAGCCATCTTCCTTCATGGAGCACAGACCCCCAGAGCCTGGGT
CTTGGAATGCAGCCCAGCACTGCCAACCGGGCCGACCCCGTGGGGGCTGGGGCCACCGGC
TGGATGGCTTCCCCCCCGGACGACCTTCTCTGGATAATATGGACCAGATTTGCCTTCCTA
ATCGTCAGCATGTGGTGTATGGCCCTTGGAACCTGCCGCAGACTGGCTTTTCCCACCTTA
GTCGCCAGGGTGAGGCCCTCAATTTGCTGGAGACCGGATATTCTCGATGCTGCCGCTGTC
ACAACTACATACACCGCTTGGACTGTGCAAAACTCGTGTGGGAGGACGCGATGACCCGGT
TCTGTGAGGCCGAGTTCTCGGTCAAGACCCGACCCCACGGGTGCTGCAAACGGCAGGGGG
AGGCTCGATTCTCCTGCTTCCAGGAGGAAGCTCCCCGGCCACACTACCAGCTCCGGGCCT
GCCCCAGCCACCAGCCCGGTATTTCCTCGGGCCCCGAGCTGCCTTTTCCCCCTGGGCCAC
CCACACTGGACAATATCAAGAACATCTGCCACCTAAGACGCTTCCGCTCCGTGCCACGCA
ACCTCCCAGCTACTGACCCCATCCAAAGGCAGCTGCATGCTCTGACCCAGCTGGAGGGGG
AGTTCCAGCGCTGTTGCCAGCAGGGGAACAACCACACCTGTACATGGAAGGCCTGGGAGG
ATGCCCTTGATGGATACTGTAATCAGGAACAGGCTACAAAGACCCACCGCCACTTGTGTT
GCCACCACCCTCCTAGCCCTGCCCGCGATGAGTGCTTTGCCCGTCAGGCTCCCTATCCCA
ACTACGACCGGGACATCTTGGCTCTTGACCTCAGCCGAGTCACCCCCAACCTCATGAGTC
ATCTCTGTGGCAATCGAAGAGTTCTCACCAAACATAAGCAGATTCCTGGGCTGATCCAGA
ACATGACAGTCCGATGCTGTGATGTGCCGTTTCCAGAGCAAGCCTGCTGTGCTGAGGAGG
AGAAAGCAGCCTTTATCGACAACCTGTGTGGCCCCCGAAGAAAGTTCTGGCGAGACTCTG
CCCATTGCTGTAAACTGAGTCCTGGGGATGAACAGGTCAACTGCTTCAACGTTAATTATC
TGAGGAATGTGGCTGTAGTGGCTGGAGACACTAGGGATGCCAAGGGCCAGGGGGAGCAGG
GCCCAACTCAGGGAACAAATATCAGCCCCACCCTTGAGCCCAAGGAAGAGTGAGTCACCC
CAGAGCCTTGGAGGATCAGATTGGGGGAACCCCACCCCACCCCACCCTCCTGGAATATTC
ATTACAGTAAACACCTCTTGGATTTGGCCTCATTATTGTCTGTAACATCACACACAAACA
CACCCTCCTAAGCCTGCCCAAATTTTCTTTAGTGACTGGCCCCTGAGGCCCACTGCCCCA
CCCCCACTAACTGAGCAGAAGTTGTTCCACAGGCTATTGGGACCATAACTAAACAGCTTA
ACTTTAGTATTTGTCGTCTTGAATTTATTCACATATTTAAAAGGAATGTCACTTTGTTAT
CTGGCTATCAGAATTCAGATGTGAAAAGGATATGATTCATGTCTTTGGTGAGACCCCAAA
ATGCCACAGCCCTGCCTGACATTTTAAAATCTTCAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACAACGGCAGTGACAGCAACTGGACAAGCAGGCTCCCAGCTGTCCAGCCCTTCAGATCTG
CCTGAGAGGACCTACCTGGGTTGCCACCGACCAGCCCTTGCCCCAGGATGGGGACCACGT
CCAGAGCAGCCTTGGTCTTGGCCTATTTGGCTGTTGCTTCTGTAGTCCCAGAGGGAGTTT
CCAAGGCTCCAGGGCAAAGGGAGCTGGGGGCAGAGCACCTCCTTCAAGAAGCTGGCTATG
CTGCACCCCCTTCCCCACCCCTGAGCCACACTCTCCCCAGGGATCCCCCTGACACTTCTC
AGCAGAGCCCTCACTTTGAGGGACAGAGTGAAGTGCAGCCCTCTTCCTCTCAGGAAGCCA
TCCCATTCCAGCAGGAGGAGCTGACCCCTGCCCAACTCCCTGCGGAAAAGAAAGGGGATC
CTCCTCTCCTTCAAGAAACTGTGCCCCTCCAAAAAGAGCAGTCCCCTCCCAAGCTCCCTA
CAGAACAGAAGGAAAAAAAGCCATCTTCCTTCATGGAGCACAGACCCCCAGAGCCTGGGT
CTTGGAATGCAGCCCAGCACTGCCAACCGGGCCGACCCCGTGGGGGCTGGGGCCACCGGC
TGGATGGCTTCCCCCCCGGACGACCTTCTCTGGATAATATGGACCAGATTTGCCTTCCTA
ATCGTCAGCATGTGGTGTATGGCCCTTGGAACCTGCCGCAGACTGGCTTTTCCCACCTTA
GTCGCCAGGGTGAGGCCCTCAATTTGCTGGAGACCGGATATTCTCGATGCTGCCGCTGTC
ACAACTACATACACCGCTTGGACTGTGCAAAACTCGTGTGGGAGGACGCGATGACCCGGT
TCTGTGAGGCCGAGTTCTCGGTCAAGACCCGACCCCACGGGTGCTGCAAACGGCAGGGGG
AGGCTCGATTCTCCTGCTTCCAGGAGGAAGCTCCCCGGCCACACTACCAGCTCCGGGCCT
GCCCCAGCCACCAGCCCGGTATTTCCTCGGGCCCCGAGCTGCCTTTTCCCCCTGGGCCAC
CCACACTGGACAATATCAAGAACATCTGCCACCTAAGACGCTTCCGCTCCGTGCCACGCA
ACCTCCCAGCTACTGACCCCATCCAAAGGCAGCTGCATGCTCTGACCCAGCTGGAGGGGG
AGTTCCAGCGCTGTTGCCAGCAGGGGAACAACCACACCTGTACATGGAAGGCCTGGGAGG
ATGCCCTTGATGGATACTGTAATCAGGAACAGGCTACAAAGACCCACCGCCACTTGTGTT
GCCACCACCCTCCTAGCCCTGCCCGCGATGAGTGCTTTGCCCGTCAGGCTCCCTATCCCA
ACTACGACCGGGACATCTTGGCTCTTGACCTCAGCCGAGTCACCCCCAACCTCATGAGTC
ATCTCTGTGGCAATCGAAGAGTTCTCACCAAACATAAGCAGATTCCTGGGCTGATCCAGA
ACATGACAGTCCGATGCTGTGATGTGCCGTTTCCAGAGCAAGCCTGCTGTGCTGAGGAGG
AGAAAGCAGCCTTTATCGACAACCTGTGTGGCCCCCGAAGAAAGTTCTGGCGAGACTCTG
CCCATTGCTGTAAACTGAGTCCTGGGGATGAACAGGTCAACTGCTTCAACGTTAATTATC
TGAGGAATGTGGCTGTAGTGGCTGGAGACACTAGGGATGCCAAGGGCCAGGGGGAGCAGG
GCCCAACTCAGGGAACAAATATCAGCCCCACCCTTGAGCCCAAGGAAGAGTGAGTCACCC
CAGAGCCTTGGAGGATCAGATTGGGGGAACCCCACCCCACCCCACCCTCCTGGAATATTC
ATTACAGTAAACACCTCTTGGATTTGGCCTCATTATTGTCTGTAACATCACACACAAACA
CACCCTCCTAAGCCTGCCCAAATTTTCTTTAGTGACTGGCCCCTGAGGCCCACTGCCCCA
CCCCCACTAACTGAGCAGAAGTTGTTCCACAGGCTATTGGGACCATAACTAAACAGCTTA
ACTTTAGTATTTGTCGTCTTGAATTTATTCACATATTTAAAAGGAATGTCACTTTGTTAT
CTGGCTATCAGAATTCAGATGTGAAAAGGATATGATTCATGTCTTTGGTGAGACCCCAAA
ATGCCACAGCCCTGCCTGACATTTTAAAATCTTCAC
|
|
gi|23270687|gb|AAH23505.1| |
Protein identifier
|
gi|23270687|gb|AAH23505.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-177, gnl|bosTau2|chr3 (17006619-17006441) |
|
1-177, gnl|canFam2|chr17 (62775965-62776131) |
|
1-177, gnl|dasNov1|scaffold_53675 (13275-13113) |
|
1-177, gnl|echTel1|scaffold_314902 (74357-74522) |
|
1-177, gnl|Hg17|chr1 (147293656-147293828) |
|
1-177, gnl|hg17|chr4 (12316876-12317041) |
|
1-177, gnl|mm7|chr3 (95613506-95613327) |
|
1-177, gnl|Mm7|chr3 (95613512-95613323) |
|
1-177, gnl|panTro1|chr3 (12525099-12525264) |
|
1-177, gnl|rheMac2|chr5 (7468173-7468341) |
| |
|
185-333, gnl|bosTau2|chr3 (17005249-17005099) |
|
185-333, gnl|Hg17|chr1 (147295162-147295311) |
|
185-333, gnl|Mm7|chr3 (95612126-95611962) |
| |
|
812-1193, gnl|bosTau2|chr3 (17003281-17002900) |
|
812-1193, gnl|Hg17|chr1 (147296999-147297380) |
|
812-1193, gnl|Mm7|chr3 (95610178-95609797) |
| |
|
1194-1414, gnl|bosTau2|chr3 (17002415-17002195) |
|
1194-1414, gnl|Hg17|chr1 (147297901-147298121) |
|
1194-1414, gnl|Mm7|chr3 (95609369-95609149) |
| |
|
1501-1979, gnl|bosTau2|chr3 (17001524-17001047) |
|
1501-1979, gnl|Hg17|chr1 (147298784-147299331) |
|
1501-1979, gnl|Mm7|chr3 (95608422-95607975) |
| |
|
1998-2136, gnl|bosTau2|chr3 (17000784-17000647) |
|
1998-2136, gnl|Hg17|chr1 (147299348-147299481) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-177, gnl|bosTau2|chr3 (17006619-17006441) |
|
1-177, gnl|canFam2|chr17 (62775965-62776131) |
|
1-177, gnl|dasNov1|scaffold_53675 (13275-13113) |
|
1-177, gnl|echTel1|scaffold_314902 (74357-74522) |
|
1-177, gnl|Hg17|chr1 (147293656-147293828) |
|
1-177, gnl|hg17|chr4 (12316876-12317041) |
|
1-177, gnl|mm7|chr3 (95613506-95613327) |
|
1-177, gnl|Mm7|chr3 (95613512-95613323) |
|
1-177, gnl|panTro1|chr3 (12525099-12525264) |
|
1-177, gnl|rheMac2|chr5 (7468173-7468341) |
| |
|
185-333, gnl|bosTau2|chr3 (17005249-17005099) |
|
185-333, gnl|Hg17|chr1 (147295162-147295311) |
|
185-333, gnl|Mm7|chr3 (95612126-95611962) |
| |
|
812-1193, gnl|bosTau2|chr3 (17003281-17002900) |
|
812-1193, gnl|Hg17|chr1 (147296999-147297380) |
|
812-1193, gnl|Mm7|chr3 (95610178-95609797) |
| |
|
1194-1414, gnl|bosTau2|chr3 (17002415-17002195) |
|
1194-1414, gnl|Hg17|chr1 (147297901-147298121) |
|
1194-1414, gnl|Mm7|chr3 (95609369-95609149) |
| |
|
1501-1979, gnl|bosTau2|chr3 (17001524-17001047) |
|
1501-1979, gnl|Hg17|chr1 (147298784-147299331) |
|
1501-1979, gnl|Mm7|chr3 (95608422-95607975) |
| |
|
1998-2136, gnl|bosTau2|chr3 (17000784-17000647) |
|
1998-2136, gnl|Hg17|chr1 (147299348-147299481) |
|
jca (1.02564) |
|
ton (0.877501) |
|
cov (0.792917) |
|
cly (0.723851) |
|
sto (0.359648) |
|
gul (0.355177) |
|
rec (0.346141) |
|
duo (0.345602) |
|
nca (0.273748) |
|
aor (0.195274) |
|
eye (0.170503) |
|
cli (0.152812) |
|
lun (0.150489) |
|
lin (0.145603) |
|
cst (0.140036) |
|
che (0.136314) |
|
bla (0.124347) |
|
eep (0.122564) |
|
eru (0.120048) |
|
jca (1.02564) |
|
ton (0.877501) |
|
cov (0.792917) |
|
cly (0.723851) |
|
sto (0.359648) |
|
gul (0.355177) |
|
rec (0.346141) |
|
duo (0.345602) |
|
nca (0.273748) |
|
aor (0.195274) |
|
eye (0.170503) |
|
cli (0.152812) |
|
lun (0.150489) |
|
lin (0.145603) |
|
cst (0.140036) |
|
che (0.136314) |
|
bla (0.124347) |
|
eep (0.122564) |
|
eru (0.120048) |
