Non-Coding RNA Search

Ss1.1-rjca21c_b7.5.5

Sequence:


               
               GCGGCCGCGTCCTCTCTCCCTTCCTACCCGTCCCCGGTGGCTACCTCCTACCCGTCCCCG
GTCACTACCTCTTACCCTTCCCCAGCGACCACCTCATACCCGTCGCCCGTGCCCACCTCC
TACTCCTCTCCCGGCTCCTCGACCTACCCATCCCCCGTGCACAGTGGTTTCCCATCACCC
TCGGTGGCCACCACGTACGCCTCAGTTCCTCCTGCTTTCCCCACCCAGGGCAGCAGCTTT
CCTTCCTCAGCTGTCACCAACTCCTTCAGCGCCTCCACAGGGCTTTCGGACATGGCGACA
ACCTTTTCTCCCAGGACAATTGAAATCTGCTAAAGGGACAGGAAAACGGGAGCAAAAGAA
ACACTTAAAGAGACTCAAAGGACAGGAGGAGGAGTTGGCCATGGGAAAGGGTTCCTCTTA
GGTGGGATGCAGGTTCGCAGAGCCACATCCTCCCCCTCTACTTGACCCCAAGGTCACCAT
GGAAGGTCTGTTAGCCAACAATTCCTTCTGCCCACTTCCCTTTCCTCCGCAGTTCCTACT
CCCTTTGACTTCAGCTGCCTGAAACAGCCATGTCCAAGTTCTTCACTTCTATCCAAAGAA
CTTGATTTGCATGGATTTTGGATATATCATTTCAGTATCATCTCCATCGTATGCCTGACC
CCTTGCTCCCTTCAGTGCTAGAAAATCAAGTTGGAAAAATGGGCTTTGGGCCCCTCAGAG
CCCAGCCCTGTACCCTTGTACAGTGTCTATGCCATGGATTTTGTTTTTCTTGGGGTATTC
TTGATGTGAAGATAATTTGCATACTCTATTGTATTATTTGGAGTTAGGTCCTCATTTTGG
GGGGAAAAAAGAAAAGCCAAGCAAACCAATGGTGATCCTTTATTTTGTGATGATGCTGTG
ACGATTAAGTTTGAAGCTTTTTTTGAAACAGCAGTTCTCGGTATTAATCAGAGCATGTGT
CAGAGTGTTGTTCTGTTAACCTTTTTGTAAATATTGCCGGACTGTACTCTCACATGTGGC
AAAATATGGTTTGGTTTTTCTTCTTTTTTTCTAAAAATGGGTTTTTTTGTTTTTTGGTTT
GTTTTTTTTTTTTTTTTTTTTTTGTCCTTTTGGTTTAAAAAGTTTCACGTCTTGGTGCCT
TTTGTGTGATGCGCCTTGCCGATGGCTTGACATGTGCAATTGTGAGGGAAGTGCTCACCT
CTAGCCTTAAGGGGGGCAGGGAGTGATGACCGGGGGAGGCTTTGGGAGCAAAATAAGGAA
GAGGGCCGAGCTTGGCTTCAGCTCTCGAGAATGTAAGAAAACAAAAATCTAAAAATCTGA
ACTCTCAAAAGTCTATTTTTTTAACTGAAAATGTAAATTTATAAATATATTCAGGAGTTG
GAATGTTGTAGTTACCTACTGAGTAGGCGGCAATTTTTGTATGTTATGAACATGCAGTTC
ATTATTTTGTGGTTTTATTTTACTTTGTACTTGTGTTTGCTTAAACAAAGTGACTGTTTG
GCTTATAAACACATTGAATGCGCTTTATGGCCCATGGGATATGTCGTGTATATCCTTCAG
AAAAATTAAAAGGAAAATAAAATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCGTCCTCTCTCCCTTCCTACCCGTCCCCGGTGGCTACCTCCTACCCGTCCCCG
GTCACTACCTCTTACCCTTCCCCAGCGACCACCTCATACCCGTCGCCCGTGCCCACCTCC
TACTCCTCTCCCGGCTCCTCGACCTACCCATCCCCCGTGCACAGTGGTTTCCCATCACCC
TCGGTGGCCACCACGTACGCCTCAGTTCCTCCTGCTTTCCCCACCCAGGGCAGCAGCTTT
CCTTCCTCAGCTGTCACCAACTCCTTCAGCGCCTCCACAGGGCTTTCGGACATGGCGACA
ACCTTTTCTCCCAGGACAATTGAAATCTGCTAAAGGGACAGGAAAACGGGAGCAAAAGAA
ACACTTAAAGAGACTCAAAGGACAGGAGGAGGAGTTGGCCATGGGAAAGGGTTCCTCTTA
GGTGGGATGCAGGTTCGCAGAGCCACATCCTCCCCCTCTACTTGACCCCAAGGTCACCAT
GGAAGGTCTGTTAGCCAACAATTCCTTCTGCCCACTTCCCTTTCCTCCGCAGTTCCTACT
CCCTTTGACTTCAGCTGCCTGAAACAGCCATGTCCAAGTTCTTCACTTCTATCCAAAGAA
CTTGATTTGCATGGATTTTGGATATATCATTTCAGTATCATCTCCATCGTATGCCTGACC
CCTTGCTCCCTTCAGTGCTAGAAAATCAAGTTGGAAAAATGGGCTTTGGGCCCCTCAGAG
CCCAGCCCTGTACCCTTGTACAGTGTCTATGCCATGGATTTTGTTTTTCTTGGGGTATTC
TTGATGTGAAGATAATTTGCATACTCTATTGTATTATTTGGAGTTAGGTCCTCATTTTGG
GGGGAAAAAAGAAAAGCCAAGCAAACCAATGGTGATCCTTTATTTTGTGATGATGCTGTG
ACGATTAAGTTTGAAGCTTTTTTTGAAACAGCAGTTCTCGGTATTAATCAGAGCATGTGT
CAGAGTGTTGTTCTGTTAACCTTTTTGTAAATATTGCCGGACTGTACTCTCACATGTGGC
AAAATATGGTTTGGTTTTTCTTCTTTTTTTCTAAAAATGGGTTTTTTTGTTTTTTGGTTT
GTTTTTTTTTTTTTTTTTTTTTTGTCCTTTTGGTTTAAAAAGTTTCACGTCTTGGTGCCT
TTTGTGTGATGCGCCTTGCCGATGGCTTGACATGTGCAATTGTGAGGGAAGTGCTCACCT
CTAGCCTTAAGGGGGGCAGGGAGTGATGACCGGGGGAGGCTTTGGGAGCAAAATAAGGAA
GAGGGCCGAGCTTGGCTTCAGCTCTCGAGAATGTAAGAAAACAAAAATCTAAAAATCTGA
ACTCTCAAAAGTCTATTTTTTTAACTGAAAATGTAAATTTATAAATATATTCAGGAGTTG
GAATGTTGTAGTTACCTACTGAGTAGGCGGCAATTTTTGTATGTTATGAACATGCAGTTC
ATTATTTTGTGGTTTTATTTTACTTTGTACTTGTGTTTGCTTAAACAAAGTGACTGTTTG
GCTTATAAACACATTGAATGCGCTTTATGGCCCATGGGATATGTCGTGTATATCCTTCAG
AAAAATTAAAAGGAAAATAAAATAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6Q2E2_FELCA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6Q2E2_FELCA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               907-1150, gnl|bosTau2|chr20 (1536815-1536584)
               

               
               907-1150, gnl|Hg17|chr5 (137832241-137832453)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               907-1150, gnl|bosTau2|chr20 (1536815-1536584)
               

               
               907-1150, gnl|Hg17|chr5 (137832241-137832453)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cov (0.660764)
               

               
               pla (0.534688)
               

               
               liv (0.438853)
               

               
               amn (0.417711)
               

               
               cga (0.279096)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.660764)
               

               
               pla (0.534688)
               

               
               liv (0.438853)
               

               
               amn (0.417711)
               

               
               cga (0.279096)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	907-1150, gnl\|bosTau2\|chr20 (1536815-1536584)
	907-1150, gnl\|Hg17\|chr5 (137832241-137832453)

	cov (0.660764)
	pla (0.534688)
	liv (0.438853)
	amn (0.417711)
	cga (0.279096)
	jca (0.22792)
	nep (0.183925)
	fty (0.17584)
	nco (0.161734)
	fat (0.147427)
	tra (0.123092)
	med (0.116252)
	ldo (0.0970026)