Non-Coding RNA Search

Ss1.1-rjca21c_k5.5

Sequence:


               
               TTAACAACATGAAGACCAAATTTAAAGAAACAATTGAGAAATGTGATAATCTGGAGCACA
GACTAAATGATCTCCTGAAAGAAAAGCAGTCTGTGGAAAGAAAGTGCACTCAGCTAAACA
CGAAAGTGGCCAAACTCACTACGGAGCTCAAAGAGGAGCAGGAAATGAACAAGTGTCTAC
GAGCCAATCAAGTCCTCCTACAGAACAAGCTGAAGGAGGAGGAGAGGGTGTTGAAAGAGA
CCTGCGACCAGAAGGATATGCAGATTACCGAGATCCGGGAGCAGCTGCGGGACGTCATGT
TCTACCTGGAGACACAGCAAAAGATCAGCCATCTGCCTGCTGAGGCACGGCAGGAAATTC
AGGAGGGACAGATCAACATCCCCATGGCCTCAGCCTCGAGCCCCTCCTCTTCGGGGGGCA
GTGGGAAGCTGTCGTCCAGGAAGGGCCGCAGCAAGAGGGGCAAGTGACCTTCAGAGAAAC
AGATGTCCCTGAGACTGTCTTCCCTGGCACCTCAAGGCTGTGCCAGGGCCTTCAGCTCAA
CATGAGGGTAGACCCTAAATAAGTACAAGCGAGGATCAAGCCGCAGTCGTATGGTTCTTT
CATTTGCTAGTGTGTGGTGTCACAGGGTAGAGGGTTGACGAGGAGAGCTGAGGGAAACAG
CGGTGTTATAAAAGGTGGCTGCTTTTTTCAACTGTAATAATTCACTAACCTCGGACGTTC
TAATGACCATTTTGCCTTCCTACTTGGATAGATGCCCCAACTCTGCTATGCGTTTTTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAACAACATGAAGACCAAATTTAAAGAAACAATTGAGAAATGTGATAATCTGGAGCACA
GACTAAATGATCTCCTGAAAGAAAAGCAGTCTGTGGAAAGAAAGTGCACTCAGCTAAACA
CGAAAGTGGCCAAACTCACTACGGAGCTCAAAGAGGAGCAGGAAATGAACAAGTGTCTAC
GAGCCAATCAAGTCCTCCTACAGAACAAGCTGAAGGAGGAGGAGAGGGTGTTGAAAGAGA
CCTGCGACCAGAAGGATATGCAGATTACCGAGATCCGGGAGCAGCTGCGGGACGTCATGT
TCTACCTGGAGACACAGCAAAAGATCAGCCATCTGCCTGCTGAGGCACGGCAGGAAATTC
AGGAGGGACAGATCAACATCCCCATGGCCTCAGCCTCGAGCCCCTCCTCTTCGGGGGGCA
GTGGGAAGCTGTCGTCCAGGAAGGGCCGCAGCAAGAGGGGCAAGTGACCTTCAGAGAAAC
AGATGTCCCTGAGACTGTCTTCCCTGGCACCTCAAGGCTGTGCCAGGGCCTTCAGCTCAA
CATGAGGGTAGACCCTAAATAAGTACAAGCGAGGATCAAGCCGCAGTCGTATGGTTCTTT
CATTTGCTAGTGTGTGGTGTCACAGGGTAGAGGGTTGACGAGGAGAGCTGAGGGAAACAG
CGGTGTTATAAAAGGTGGCTGCTTTTTTCAACTGTAATAATTCACTAACCTCGGACGTTC
TAATGACCATTTTGCCTTCCTACTTGGATAGATGCCCCAACTCTGCTATGCGTTTTTCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2665906|gb|AAB88538.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2665906|gb|AAB88538.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               260-539, + strand, RNAz p=0.915935

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               260-539, + strand, RNAz p=0.915935

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006768, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006768, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               101-780, gnl|bosTau2|chr17 (29289478-29288795)
               

               
               101-780, gnl|Hg17|chr12 (110545089-110544427)
               

               
               101-780, gnl|Mm7|chr5 (120919388-120920002)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-780, gnl|bosTau2|chr17 (29289478-29288795)
               

               
               101-780, gnl|Hg17|chr12 (110545089-110544427)
               

               
               101-780, gnl|Mm7|chr5 (120919388-120920002)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.22792)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)

	101-780, gnl\|bosTau2\|chr17 (29289478-29288795)
	101-780, gnl\|Hg17\|chr12 (110545089-110544427)
	101-780, gnl\|Mm7\|chr5 (120919388-120920002)