Ss1.1-rjca22c_i5.5
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AAAGTATATATATGTATGTATGTATGTATGTATGTATGTACGTATATGTATATGATTATG
TATACATTTCCGTATGTGTGCAGGTATGTGTGGGCGGCCAGTGTGAACAGTGTCTGTGTG
TATATCTGTACATAGATATAGACACACACTTTAAAACAGACTTACCAAGCACTTTTTAAA
AGAAAACTATTTTGCAGTCCTCTCCCTACCCGCTCCCTACTTTTCCCACTGCAGAGACAA
AGTCCCCCCTTCTCCCACCAGCCTTTTGGCAGGGAGTCAGTTTCTGTCTCTTTTTTATGT
AGGAACTAACTATTTTTAACTTTTTTCTGGGGCCTGAGCAGGGAGGGGTGGGAAACTAGA
AGGGGGTGAGGGAAGGGGCTAAGCCTTCGGGGCAGGCCCTGTTCACCCCACCTCCCCAGG
CCAGGGCCCAGAGCCAGGGCTTGTGTGGAGGACCAGCTGGAGAGCTGGCTCCAGCTGTGA
GGATGGAGGGGAGGGCGTCTGCTGGGGTCCGAGCCAGCCTAGCTCCTAGGTTTACCAAGT
GTGTATTTAGTCTGGGTGGCAGGTAAAAGTTGTGGGGCCAGCCCCACTCCTAGCCCTGGG
CCCTTGAAGCTCCTCCAGGGGCAAGGCCTAGGCCTTCTACCCTCAGATTCCTGAGGCTGG
AGTCTACCCCCCAGGCTCCCAGCGCAGCCTCCCTGGCCCCAGGGCCATCTACCAGGCTGG
CACTGCCCTCTCCATCACCCCCAG
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Blue-coloured subsequences are predicted RNA structures by RNAz
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AAAGTATATATATGTATGTATGTATGTATGTATGTATGTACGTATATGTATATGATTATG
TATACATTTCCGTATGTGTGCAGGTATGTGTGGGCGGCCAGTGTGAACAGTGTCTGTGTG
TATATCTGTACATAGATATAGACACACACTTTAAAACAGACTTACCAAGCACTTTTTAAA
AGAAAACTATTTTGCAGTCCTCTCCCTACCCGCTCCCTACTTTTCCCACTGCAGAGACAA
AGTCCCCCCTTCTCCCACCAGCCTTTTGGCAGGGAGTCAGTTTCTGTCTCTTTTTTATGT
AGGAACTAACTATTTTTAACTTTTTTCTGGGGCCTGAGCAGGGAGGGGTGGGAAACTAGA
AGGGGGTGAGGGAAGGGGCTAAGCCTTCGGGGCAGGCCCTGTTCACCCCACCTCCCCAGG
CCAGGGCCCAGAGCCAGGGCTTGTGTGGAGGACCAGCTGGAGAGCTGGCTCCAGCTGTGA
GGATGGAGGGGAGGGCGTCTGCTGGGGTCCGAGCCAGCCTAGCTCCTAGGTTTACCAAGT
GTGTATTTAGTCTGGGTGGCAGGTAAAAGTTGTGGGGCCAGCCCCACTCCTAGCCCTGGG
CCCTTGAAGCTCCTCCAGGGGCAAGGCCTAGGCCTTCTACCCTCAGATTCCTGAGGCTGG
AGTCTACCCCCCAGGCTCCCAGCGCAGCCTCCCTGGCCCCAGGGCCATCTACCAGGCTGG
CACTGCCCTCTCCATCACCCCCAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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51-170, + strand, RNAmicro p=0.957539 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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51-170, + strand, RNAmicro p=0.957539 |
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64-509, BP459509 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP459509.1|), blast E-value=0, identity=100% |
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64-353, AL522210 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens
(emb|AL522210.3|), blast E-value=0, identity=88.74% |
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64-353, BX371366 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens
(emb|BX371366.2|), blast E-value=0, identity=88.74% |
|
115-427, BP250011A20E12 Soares normalized bovine placenta Bos taurus cDNA
(gb|BF046467.1|), blast E-value=0, identity=89.59% |
|
64-353, AGENCOURT_10095282 NIH_MGC_71 Homo sapiens cDNA clone IMAGE
(gb|BU508890.1|), blast E-value=0, identity=88.74% |
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79-427, LB0263.CR_P12 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV879094.1|),
blast E-value=0, identity=89.83% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
64-509, BP459509 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP459509.1|), blast E-value=0, identity=100% |
|
64-353, AL522210 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens
(emb|AL522210.3|), blast E-value=0, identity=88.74% |
|
64-353, BX371366 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens
(emb|BX371366.2|), blast E-value=0, identity=88.74% |
|
115-427, BP250011A20E12 Soares normalized bovine placenta Bos taurus cDNA
(gb|BF046467.1|), blast E-value=0, identity=89.59% |
|
64-353, AGENCOURT_10095282 NIH_MGC_71 Homo sapiens cDNA clone IMAGE
(gb|BU508890.1|), blast E-value=0, identity=88.74% |
|
79-427, LB0263.CR_P12 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV879094.1|),
blast E-value=0, identity=89.83% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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nlu (0.191681) |
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pla (0.133672) |
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jca (0.11396) |
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nlu (0.191681) |
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pla (0.133672) |
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jca (0.11396) |