Non-Coding RNA Search

Ss1.1-rjca22c_j7.5

Sequence:


               
               TGGGGTCCCTCTCTCGCACAAGGGCTGGGCTGAGACCTGGCTGAGTGCAGCGCGCTGTTT
CCCTTTGGGGGGCCTACGGTCTTGTCACCCGGCCTGTGCCCCATGGTAACCAGAGGCAGG
ACGCGAGCCTCTTTCTGCCTCTTTCTCTCCCTACCCCCCCGCACCCAGGCCTGTGTCCTG
TACCCCAGAGCCCCCTTCTCACTGCTGAGTCTGAGGAGGGCCCCCCCAAACCCTTAGCCA
GCCTCTGTCGCTTCTCTTCTTCCCTGGCAGCCTCAGCTCTGAACCCCCACCCCACCTCTA
ACCCCCCTTCTCACCCAGCCCCTCCTTCTGAGCCAGGGCCCTGGGGTTTGGGGACCCCTC
TTGCTCTTGGTGGGAGTCAGCTGAGAGGGCCAAGCATTTGTCACTCCTGTGCCTGCTGGG
GTGGCCGGGGAGTGTGGCAGGAGGGGCCCGGGCGGGGCCTGAGAACCTGGGCATCTCTGT
GGCGTGGTCAGCTGGGCTGGAGACAAGACTGGGGAGAGACACCCTGACCTCCTGGGGGTG
ACCGGCCTGGGCGGGGGTGTTGTCTCCTGCCGGTCGGGGGAGGGCTCTGTCCCTAGAGAG
TCCCCTGTGGGGACCAAAATAAGTTCCCTAACGTTTCCAGCTCCTGGCTCTGGTTTGGAG
AGAGAGGAGGGCGTTGCCAGGGCCCTGGGGGCCTCAGAAGGGGGACCCCAGGGGACTGTT
CCAGGTGCCGCCCTCTAGTGGGGCCCAGGGGGACAGCGCCCTGGCCCCGGATGCAGGGGA
GCCCACCCCACCCAGGCCGGAATCCCAGCAGGAATCACCAGTCCTGGGGCCGCGGCGCAG
GACGATGTGAACACAGATTCCAAGACGTGGTCCTTTTTTGTAGTTCTTAATTTTTTTTAA
TGTGCCATTATTTGTTTAAAAAAAAAAAAAGAAAAGCAAACAAATAAAACACCTTTAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGTCCCTCTCTCGCACAAGGGCTGGGCTGAGACCTGGCTGAGTGCAGCGCGCTGTTT
CCCTTTGGGGGGCCTACGGTCTTGTCACCCGGCCTGTGCCCCATGGTAACCAGAGGCAGG
ACGCGAGCCTCTTTCTGCCTCTTTCTCTCCCTACCCCCCCGCACCCAGGCCTGTGTCCTG
TACCCCAGAGCCCCCTTCTCACTGCTGAGTCTGAGGAGGGCCCCCCCAAACCCTTAGCCA
GCCTCTGTCGCTTCTCTTCTTCCCTGGCAGCCTCAGCTCTGAACCCCCACCCCACCTCTA
ACCCCCCTTCTCACCCAGCCCCTCCTTCTGAGCCAGGGCCCTGGGGTTTGGGGACCCCTC
TTGCTCTTGGTGGGAGTCAGCTGAGAGGGCCAAGCATTTGTCACTCCTGTGCCTGCTGGG
GTGGCCGGGGAGTGTGGCAGGAGGGGCCCGGGCGGGGCCTGAGAACCTGGGCATCTCTGT
GGCGTGGTCAGCTGGGCTGGAGACAAGACTGGGGAGAGACACCCTGACCTCCTGGGGGTG
ACCGGCCTGGGCGGGGGTGTTGTCTCCTGCCGGTCGGGGGAGGGCTCTGTCCCTAGAGAG
TCCCCTGTGGGGACCAAAATAAGTTCCCTAACGTTTCCAGCTCCTGGCTCTGGTTTGGAG
AGAGAGGAGGGCGTTGCCAGGGCCCTGGGGGCCTCAGAAGGGGGACCCCAGGGGACTGTT
CCAGGTGCCGCCCTCTAGTGGGGCCCAGGGGGACAGCGCCCTGGCCCCGGATGCAGGGGA
GCCCACCCCACCCAGGCCGGAATCCCAGCAGGAATCACCAGTCCTGGGGCCGCGGCGCAG
GACGATGTGAACACAGATTCCAAGACGTGGTCCTTTTTTGTAGTTCTTAATTTTTTTTAA
TGTGCCATTATTTGTTTAAAAAAAAAAAAAGAAAAGCAAACAAATAAAACACCTTTAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               183-300, - strand, RNAz p=0.721487

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-300, - strand, RNAz p=0.721487

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-330, gnl|bosTau2|chr19 (39496924-39497245)
               

               
               1-330, gnl|Hg17|chr17 (58123700-58124010)
               

               
               1-330, gnl|Mm7|chr11 (105459163-105459470)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-330, gnl|bosTau2|chr19 (39496924-39497245)
               

               
               1-330, gnl|Hg17|chr17 (58123700-58124010)
               

               
               1-330, gnl|Mm7|chr11 (105459163-105459470)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               amn (0.417711)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               jca (0.22792)
               

               
               hyp (0.142837)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               jca (0.22792)
               

               
               hyp (0.142837)

	1-330, gnl\|bosTau2\|chr19 (39496924-39497245)
	1-330, gnl\|Hg17\|chr17 (58123700-58124010)
	1-330, gnl\|Mm7\|chr11 (105459163-105459470)

	amn (0.417711)
	ese (0.253004)
	eru (0.240096)
	jca (0.22792)
	hyp (0.142837)