Non-Coding RNA Search

Ss1.1-rjca22c_o4.5

Sequence:


               
               TGGCACTCGGCGGCGGCCCCGGATCCAGGCCGGGCCGCGGCTCTTGCCGCGCAGCTTAGC
CCATCCCGGCCCAGGCGCCAAGCCGAGGCCGTCTGCTCCCCGCACCCGGGAGTAGCGGTT
ACTTCCGCGACCGGTCAGGTGTCCACCCCGGCAGGCCCGCCTGCATCCCCGCCCGGCCCC
GGTCCCCCGGGCCATGCGGCCTCGGCCCCGCCGGCGCCCACCGCGCACCCGAGGAGATGA
GGCTCCGCAATGGCACCTTCCTGACGCTGCTGCTCTTCTGCCTGTGCGCCTTCCTCTCCC
TCTCCTGGTACGCGGCGCTCAGCGGCCAGAAAGGCGATGTGGTAGACGTGTACCAGCGGG
AGTTCCTGGCGCTGCGGGACCGGTTGCGTGCAGCTGAGCAGGAGAGCCTCAAACGCTCCA
AAGAGCTCAACCTGGTGCTGGACGAGATCAAGAGGGCCGTGTCGGAGAGGCAGGCGCTGC
GAGACGGAGACAGCAATCGCACCTGGGGCCGCCTAACAGAGGATCCACGCCTGAAGCCGT
GGAACGCCTCGCAGAAGCACGTGCTGCACCTCCCCACTGTCTTTCACCACCTGCCGCACC
TGCTGGCCAAGGAAAGCAGCCTGCAGCCGGCCGTGCGCGTGGGCCAGGGCCGCACCGGAG
TGTCGGTGGTGATGGGCATCCCCAGTGTGCGGCGCGAGGTGCACTCGTACCTGACAGACA
CGTTGCACTCGCTCATCTCGGAGCTGAGCCCGCAGGAGAAGGAAGACTCGGTCATCGTGG
TGCTGATCGCTGAGACTGACCCACAGTATGCCTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCACTCGGCGGCGGCCCCGGATCCAGGCCGGGCCGCGGCTCTTGCCGCGCAGCTTAGC
CCATCCCGGCCCAGGCGCCAAGCCGAGGCCGTCTGCTCCCCGCACCCGGGAGTAGCGGTT
ACTTCCGCGACCGGTCAGGTGTCCACCCCGGCAGGCCCGCCTGCATCCCCGCCCGGCCCC
GGTCCCCCGGGCCATGCGGCCTCGGCCCCGCCGGCGCCCACCGCGCACCCGAGGAGATGA
GGCTCCGCAATGGCACCTTCCTGACGCTGCTGCTCTTCTGCCTGTGCGCCTTCCTCTCCC
TCTCCTGGTACGCGGCGCTCAGCGGCCAGAAAGGCGATGTGGTAGACGTGTACCAGCGGG
AGTTCCTGGCGCTGCGGGACCGGTTGCGTGCAGCTGAGCAGGAGAGCCTCAAACGCTCCA
AAGAGCTCAACCTGGTGCTGGACGAGATCAAGAGGGCCGTGTCGGAGAGGCAGGCGCTGC
GAGACGGAGACAGCAATCGCACCTGGGGCCGCCTAACAGAGGATCCACGCCTGAAGCCGT
GGAACGCCTCGCAGAAGCACGTGCTGCACCTCCCCACTGTCTTTCACCACCTGCCGCACC
TGCTGGCCAAGGAAAGCAGCCTGCAGCCGGCCGTGCGCGTGGGCCAGGGCCGCACCGGAG
TGTCGGTGGTGATGGGCATCCCCAGTGTGCGGCGCGAGGTGCACTCGTACCTGACAGACA
CGTTGCACTCGCTCATCTCGGAGCTGAGCCCGCAGGAGAAGGAAGACTCGGTCATCGTGG
TGCTGATCGCTGAGACTGACCCACAGTATGCCTCAC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               331-515, gnl|bosTau2|chr7 (510020-509836)
               

               
               331-515, gnl|Hg17|chr5 (179161579-179161394)
               

               
               331-515, gnl|Mm7|chr11 (50187421-50187618)
               


               
               517-669, gnl|bosTau2|chr7 (509749-509598)
               

               
               517-669, gnl|Hg17|chr5 (179161303-179161148)
               

               
               517-669, gnl|Mm7|chr11 (50187715-50187870)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               331-515, gnl|bosTau2|chr7 (510020-509836)
               

               
               331-515, gnl|Hg17|chr5 (179161579-179161394)
               

               
               331-515, gnl|Mm7|chr11 (50187421-50187618)
               


               
               517-669, gnl|bosTau2|chr7 (509749-509598)
               

               
               517-669, gnl|Hg17|chr5 (179161303-179161148)
               

               
               517-669, gnl|Mm7|chr11 (50187715-50187870)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               jca (0.11396)

	331-515, gnl\|bosTau2\|chr7 (510020-509836)
	331-515, gnl\|Hg17\|chr5 (179161579-179161394)
	331-515, gnl\|Mm7\|chr11 (50187421-50187618)

	517-669, gnl\|bosTau2\|chr7 (509749-509598)
	517-669, gnl\|Hg17\|chr5 (179161303-179161148)
	517-669, gnl\|Mm7\|chr11 (50187715-50187870)