Non-Coding RNA Search

Ss1.1-rjca22c_o6.5

Sequence:


               
               GGAAAAAAGCAAATTCGTTGTTGGCGGGAGGTATGAAGGGGAAGGCTCTTCACCCTCCCC
ACCATTGTGTATGGATAGGTAGTTGGGGGCAATAGAAAAGGCAGTAGATGGGGGTGCAGG
CCCCACGCTGTACAATATAGAAGAATCTGATATAGATACTTTGTATAAAAGCCACTTGTT
CTCATTTGTGTCCTCTTGCTGGCTGGCCGGGCTGGGGGGGGACTGGGGTGGGGCAAAAAA
GCTGGGGTCGTGGGCCAGGATACAGGGACACCCCCATGGTCCCCATCCTCTGGCTGTCCC
CTTGTGGGGTCACTTTGGATCCTTGGTGGGGGCATAGCAGAGCTCCAGTGGTCGGGACAC
CTTCCAGAACTTCTCATTCACCAGCTCCAGGGTCAGCGAGCCATTCAGTGTCGTGAAAGC
TCCGCCCCCAGGGGCGATGTAGATGGTGTACTGCTTTTCGCTGACACCCTCCAGACTGGG
CAAGGCAGGCTCCTCAGGGCCGTCACCTCCTCCGGCACCCCCGCCCTCCCCACCACCCCC
ATCAGGTCCTCCGGCATCAGAGGCGCCCCCTCCAGGCCCTCCTGGCTCCCCAGCCTCTTG
CTGCTGCCTCCGTTCAAGGGCAATGCGAAGGGCCAAGTACTTGGAAAGATGGTCCACTGT
GGCATTCCCAGTTGTCTTCACATACCTGGGGTAGGGAAGAGGGCAGGTTTAGGGCACAGG
AAGACTCAAATGGAGAAGGGAAGCAGGGGTTTCCACAAGGGCCTCTGGGTTAGGGGCTCT
TTCTGGGTTTGGGCAAAGGCCATTTCTGACGGAAGATTATGCGACCTTTGGTTTCGCAGG
AGTCTGGGGAAAGACAAGGCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAAAGCAAATTCGTTGTTGGCGGGAGGTATGAAGGGGAAGGCTCTTCACCCTCCCC
ACCATTGTGTATGGATAGGTAGTTGGGGGCAATAGAAAAGGCAGTAGATGGGGGTGCAGG
CCCCACGCTGTACAATATAGAAGAATCTGATATAGATACTTTGTATAAAAGCCACTTGTT
CTCATTTGTGTCCTCTTGCTGGCTGGCCGGGCTGGGGGGGGACTGGGGTGGGGCAAAAAA
GCTGGGGTCGTGGGCCAGGATACAGGGACACCCCCATGGTCCCCATCCTCTGGCTGTCCC
CTTGTGGGGTCACTTTGGATCCTTGGTGGGGGCATAGCAGAGCTCCAGTGGTCGGGACAC
CTTCCAGAACTTCTCATTCACCAGCTCCAGGGTCAGCGAGCCATTCAGTGTCGTGAAAGC
TCCGCCCCCAGGGGCGATGTAGATGGTGTACTGCTTTTCGCTGACACCCTCCAGACTGGG
CAAGGCAGGCTCCTCAGGGCCGTCACCTCCTCCGGCACCCCCGCCCTCCCCACCACCCCC
ATCAGGTCCTCCGGCATCAGAGGCGCCCCCTCCAGGCCCTCCTGGCTCCCCAGCCTCTTG
CTGCTGCCTCCGTTCAAGGGCAATGCGAAGGGCCAAGTACTTGGAAAGATGGTCCACTGT
GGCATTCCCAGTTGTCTTCACATACCTGGGGTAGGGAAGAGGGCAGGTTTAGGGCACAGG
AAGACTCAAATGGAGAAGGGAAGCAGGGGTTTCCACAAGGGCCTCTGGGTTAGGGGCTCT
TTCTGGGTTTGGGCAAAGGCCATTTCTGACGGAAGATTATGCGACCTTTGGTTTCGCAGG
AGTCTGGGGAAAGACAAGGCTCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5532598|gb|AAD44803.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5532598|gb|AAD44803.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-155, + strand, RNAz p=0.967515
               

               
               492-608, - strand, RNAz p=0.979951

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-155, + strand, RNAz p=0.967515
               

               
               492-608, - strand, RNAz p=0.979951

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               4-189, gnl|bosTau2|chr27 (31460957-31461142)
               

               
               4-189, gnl|Hg17|chr6 (33288458-33288269)
               


               
               412-864, gnl|bosTau2|chr23 (5762161-5761711)
               

               
               412-864, gnl|Hg17|chr6 (33287757-33287305)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-189, gnl|bosTau2|chr27 (31460957-31461142)
               

               
               4-189, gnl|Hg17|chr6 (33288458-33288269)
               


               
               412-864, gnl|bosTau2|chr23 (5762161-5761711)
               

               
               412-864, gnl|Hg17|chr6 (33287757-33287305)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               fce (0.543183)
               

               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	4-155, + strand, RNAz p=0.967515
	492-608, - strand, RNAz p=0.979951

	4-189, gnl\|bosTau2\|chr27 (31460957-31461142)
	4-189, gnl\|Hg17\|chr6 (33288458-33288269)

	412-864, gnl\|bosTau2\|chr23 (5762161-5761711)
	412-864, gnl\|Hg17\|chr6 (33287757-33287305)

	fce (0.543183)
	fhi (0.339155)
	ece (0.229305)
	col (0.195008)
	cje (0.165235)
	cki (0.165235)
	nco (0.161734)
	hyp (0.142837)
	pty (0.142714)
	pla (0.133672)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)