Non-Coding RNA Search

Ss1.1-rjca22c_p3.5

Sequence:


               
               CCTGTCTCTGTGGCGCTTTCCACTTTCGGAGGGATCAATGGCTACCTGTTCACCTCCTCC
AGACTGTGCTTCTCTGGAGCCCGAGAGGGGCACCTGCCCAGCCTGCTGGCCATGATCCAC
GTCAGACACTGCACCCCTATCCCCGCCCTCCTTGTCTGCTGCGGGGCCACGGCGGTCATC
ATGCTTGTGGGAGACACGTACACGCTCATCAACTACGTGTCCTTCATCAACTACCTCTGC
TACGGCGTCACCATCCTGGGCCTGCTCGTGCTGCGCTGGAGGCGGCCAGCGCTCCACAGG
CCCATCAAGGTGAACCTCCTGGTTCCCGTCACATACTTGGTCTTCTGGGCGTTCCTGCTG
GTCTTCAGCTTCATCTCAGAGCCCATGGTGTGCGGGGTGGGCATGGTCATCGTCCTCACG
GGGGTGCCCATATTCTTCCTGGGAGTGTTCTGGAGAAGCAAACCAAAGTGTGTGCACAGA
CTCACAGAGTCAGTGACACGCTGGGGCCAGGAGCTGTGTTTCGTGGTCTACCCCCAGGGC
TCCCCGGAGGAGGAGGAGAACGGTCCCTGCCAGCCCTCCGCGCTGCCCGCCCCGGGCAAG
CCCTTGAAGACACAATGAGACACTTGTGGAGCCTGAAGCAGCTGTTTTCTGTTTACATGT
TGTTGTTTATTGAGGAGGTGTTTTTGCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTCTCTGTGGCGCTTTCCACTTTCGGAGGGATCAATGGCTACCTGTTCACCTCCTCC
AGACTGTGCTTCTCTGGAGCCCGAGAGGGGCACCTGCCCAGCCTGCTGGCCATGATCCAC
GTCAGACACTGCACCCCTATCCCCGCCCTCCTTGTCTGCTGCGGGGCCACGGCGGTCATC
ATGCTTGTGGGAGACACGTACACGCTCATCAACTACGTGTCCTTCATCAACTACCTCTGC
TACGGCGTCACCATCCTGGGCCTGCTCGTGCTGCGCTGGAGGCGGCCAGCGCTCCACAGG
CCCATCAAGGTGAACCTCCTGGTTCCCGTCACATACTTGGTCTTCTGGGCGTTCCTGCTG
GTCTTCAGCTTCATCTCAGAGCCCATGGTGTGCGGGGTGGGCATGGTCATCGTCCTCACG
GGGGTGCCCATATTCTTCCTGGGAGTGTTCTGGAGAAGCAAACCAAAGTGTGTGCACAGA
CTCACAGAGTCAGTGACACGCTGGGGCCAGGAGCTGTGTTTCGTGGTCTACCCCCAGGGC
TCCCCGGAGGAGGAGGAGAACGGTCCCTGCCAGCCCTCCGCGCTGCCCGCCCCGGGCAAG
CCCTTGAAGACACAATGAGACACTTGTGGAGCCTGAAGCAGCTGTTTTCTGTTTACATGT
TGTTGTTTATTGAGGAGGTGTTTTTGCAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12837730|dbj|BAB23930.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12837730|dbj|BAB23930.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               347-466, + strand, RNAz p=0.569838

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-466, + strand, RNAz p=0.569838

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               46-158, gnl|bosTau2|chr18 (36398184-36398072)
               

               
               46-158, gnl|Hg17|chr19 (38393660-38393549)
               

               
               46-158, gnl|Mm7|chr7 (32088921-32089034)
               


               
               308-471, gnl|bosTau2|chr10 (13936624-13936787)
               

               
               308-471, gnl|Hg17|chr14 (22667247-22667084)
               

               
               308-471, gnl|Mm7|chr14 (49591851-49591688)
               


               
               485-696, gnl|bosTau2|chr18 (36396741-36396534)
               

               
               485-696, gnl|Hg17|chr19 (38391770-38391565)
               

               
               485-696, gnl|Mm7|chr7 (32090429-32090669)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-158, gnl|bosTau2|chr18 (36398184-36398072)
               

               
               46-158, gnl|Hg17|chr19 (38393660-38393549)
               

               
               46-158, gnl|Mm7|chr7 (32088921-32089034)
               


               
               308-471, gnl|bosTau2|chr10 (13936624-13936787)
               

               
               308-471, gnl|Hg17|chr14 (22667247-22667084)
               

               
               308-471, gnl|Mm7|chr14 (49591851-49591688)
               


               
               485-696, gnl|bosTau2|chr18 (36396741-36396534)
               

               
               485-696, gnl|Hg17|chr19 (38391770-38391565)
               

               
               485-696, gnl|Mm7|chr7 (32090429-32090669)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	46-158, gnl\|bosTau2\|chr18 (36398184-36398072)
	46-158, gnl\|Hg17\|chr19 (38393660-38393549)
	46-158, gnl\|Mm7\|chr7 (32088921-32089034)

	308-471, gnl\|bosTau2\|chr10 (13936624-13936787)
	308-471, gnl\|Hg17\|chr14 (22667247-22667084)
	308-471, gnl\|Mm7\|chr14 (49591851-49591688)

	485-696, gnl\|bosTau2\|chr18 (36396741-36396534)
	485-696, gnl\|Hg17\|chr19 (38391770-38391565)
	485-696, gnl\|Mm7\|chr7 (32090429-32090669)