Non-Coding RNA Search

Ss1.1-rjca23c_c24.5

Sequence:


               
               GGAAGCAGCTTATTCCAGTGTCACCCAGGGTGCAGCCACACCAGGCTCTGCAGAGGGTGT
TTTTCTTTTAACTGTAACACCTTTTCATCTTTTCTTCTTAAATAGTACCTGAGAACATTT
ACATTGTAGATAAGTAGTAAGTACATGGTGGAAAATTCTACTTTCAAGAGGACTTACTCT
CTTCTTATAAGTTCTAGATTGGCCCGCTACACAAGACAACATGAAGGAGTATGTGCTCCT
ACTGTTCTTGACTTTGTGCTCTGCCAAACCCTTATTTCGCCCTTCATACATGACACTAAA
GAATATGATGCTGAAGGACATGGAAGAAGAAGGTGATGATGATGACGACAACTCTCTTTT
CCCAACAAGAGAGCCAATTAACCCCTTCTTCCCATTCGATCTGTTTCCAACATGTCCGTT
TGGATGCCAATGCTACTCGAGAGTTGTACACTGTTCTGATCTAGGTTTGTCCTCTGTCCC
AAGCAACATTCCATTTGATACTCGAATGGTTGACCTTCAAAACAATAAAATTAAGGAAAT
CAAAGAAAATGATTTTAAAGGACTCACCTCACTTTATGCTTTGATTCTGAACAACAACAA
GTTAACAAAGATTGAAAAATCTCTACATTGCTAAAATGACTACTTGTATTGATAATTTGC
ATAAACAAGTCTTCCTTTTCTGTGTGTGATGAATGACAAAATCCCTGTTATTCAGCAGTG
TTCTAGTTAATGAAAAATTATAGATCTAATAATTTATAATTATATATTAATAATTTAATT
CAACTGATGTTTACTGAACAATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGCAGCTTATTCCAGTGTCACCCAGGGTGCAGCCACACCAGGCTCTGCAGAGGGTGT
TTTTCTTTTAACTGTAACACCTTTTCATCTTTTCTTCTTAAATAGTACCTGAGAACATTT
ACATTGTAGATAAGTAGTAAGTACATGGTGGAAAATTCTACTTTCAAGAGGACTTACTCT
CTTCTTATAAGTTCTAGATTGGCCCGCTACACAAGACAACATGAAGGAGTATGTGCTCCT
ACTGTTCTTGACTTTGTGCTCTGCCAAACCCTTATTTCGCCCTTCATACATGACACTAAA
GAATATGATGCTGAAGGACATGGAAGAAGAAGGTGATGATGATGACGACAACTCTCTTTT
CCCAACAAGAGAGCCAATTAACCCCTTCTTCCCATTCGATCTGTTTCCAACATGTCCGTT
TGGATGCCAATGCTACTCGAGAGTTGTACACTGTTCTGATCTAGGTTTGTCCTCTGTCCC
AAGCAACATTCCATTTGATACTCGAATGGTTGACCTTCAAAACAATAAAATTAAGGAAAT
CAAAGAAAATGATTTTAAAGGACTCACCTCACTTTATGCTTTGATTCTGAACAACAACAA
GTTAACAAAGATTGAAAAATCTCTACATTGCTAAAATGACTACTTGTATTGATAATTTGC
ATAAACAAGTCTTCCTTTTCTGTGTGTGATGAATGACAAAATCCCTGTTATTCAGCAGTG
TTCTAGTTAATGAAAAATTATAGATCTAATAATTTATAATTATATATTAATAATTTAATT
CAACTGATGTTTACTGAACAATAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12862262|dbj|BAB32393.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12862262|dbj|BAB32393.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               183-466, gnl|bosTau2|chr7 (51803754-51803471)
               

               
               183-466, gnl|Hg17|chr9 (92316773-92316459)
               

               
               183-466, gnl|Mm7|chr13 (49035503-49035795)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-466, gnl|bosTau2|chr7 (51803754-51803471)
               

               
               183-466, gnl|Hg17|chr9 (92316773-92316459)
               

               
               183-466, gnl|Mm7|chr13 (49035503-49035795)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eep (0.245128)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

	183-466, gnl\|bosTau2\|chr7 (51803754-51803471)
	183-466, gnl\|Hg17\|chr9 (92316773-92316459)
	183-466, gnl\|Mm7\|chr13 (49035503-49035795)

	eep (0.245128)
	nep (0.183925)
	gul (0.177588)
	nmm (0.132802)
	tra (0.123092)
	jca (0.11396)