Ss1.1-rjca23c_e7.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCCGAAGCGTGGGGTTGAAGGCCCGAGCCACCGAACAGGGCAAAGTCCCCAGCGTCTA TCCTCGAGGACGCCGTGCCTGTAGGATCTTCGGCTTCAGTCCCGGTGTGGGAGGCGAGAG TAGTCATGGCGATGTTTGAGCAGATGAGAGCGAACGTGGGCAAGTTGCTCAAGGGTATCG ACAGGTATAATCCTGAGAATCTGGCCACCCTGGAGCGCTATGTGGAGACACAGGCTAAGG AGAATGCCTATGATCTGGAAGCCAACCTGGCTGTTCTGAAACTGTACCAGTTCAACCCAG CTTTCTTCCAGACCACTGTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACCTGCCCC ACACCGACTTCACGCTGTGCAAGTGCATGATCGACCAGGCGCACCAAGAAGAACGGCCCA TCCGGCAGATTTTGTACCTGGGAGACCTGCTAGAGACCTGCCACTTCCAGGCCTTCTGGC AAGCCCTGGATGAAAACATGGACCTCCTGGAAGGTATAACTGGCTTTGAAGACTCCGTCC GCAAATTTATCTGCCATGTCGTTGGCATCACTTATCAGCACATCGATCGCTGGCTGCTGG CCGAGATGCTCGGGGATCTGACAGATGGCCAGCTGAAGGTGTGGATGAGCAAGTACGGCT GGAGCGCCGACGAGTCGGGCCAGATCTTCATCTGTAGCCAGGAGGAGAGCATTAAGCCCA AGAACATCGTGGAGAAGATCGACTTTGACAGCGTGTCCAGCATCATGGCCTCCTCCCAAT AACCTCGCAGGCATTCAATAAAGACTTGTTGACTTCTTAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCCGAAGCGTGGGGTTGAAGGCCCGAGCCACCGAACAGGGCAAAGTCCCCAGCGTCTA TCCTCGAGGACGCCGTGCCTGTAGGATCTTCGGCTTCAGTCCCGGTGTGGGAGGCGAGAG TAGTCATGGCGATGTTTGAGCAGATGAGAGCGAACGTGGGCAAGTTGCTCAAGGGTATCG ACAGGTATAATCCTGAGAATCTGGCCACCCTGGAGCGCTATGTGGAGACACAGGCTAAGG AGAATGCCTATGATCTGGAAGCCAACCTGGCTGTTCTGAAACTGTACCAGTTCAACCCAG CTTTCTTCCAGACCACTGTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACCTGCCCC ACACCGACTTCACGCTGTGCAAGTGCATGATCGACCAGGCGCACCAAGAAGAACGGCCCA TCCGGCAGATTTTGTACCTGGGAGACCTGCTAGAGACCTGCCACTTCCAGGCCTTCTGGC AAGCCCTGGATGAAAACATGGACCTCCTGGAAGGTATAACTGGCTTTGAAGACTCCGTCC GCAAATTTATCTGCCATGTCGTTGGCATCACTTATCAGCACATCGATCGCTGGCTGCTGG CCGAGATGCTCGGGGATCTGACAGATGGCCAGCTGAAGGTGTGGATGAGCAAGTACGGCT GGAGCGCCGACGAGTCGGGCCAGATCTTCATCTGTAGCCAGGAGGAGAGCATTAAGCCCA AGAACATCGTGGAGAAGATCGACTTTGACAGCGTGTCCAGCATCATGGCCTCCTCCCAAT AACCTCGCAGGCATTCAATAAAGACTTGTTGACTTCTTAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 61-193, gnl|bosTau2|chr18 (40894680-40894548) | |
| 61-193, gnl|Hg17|chr19 (43801683-43801816) | |
| 61-193, gnl|Mm7|chr7 (25916492-25916358) | |
| 284-404, gnl|bosTau2|chr18 (40889866-40889746) | |
| 284-404, gnl|canFam2|chr1 (117351619-117351474) | |
| 284-404, gnl|danRer3|chrUn (184050018-184050157) | |
| 284-404, gnl|dasNov1|scaffold_59319 (6358-6511) | |
| 284-404, gnl|echTel1|scaffold_309490 (7839-7956) | |
| 284-404, gnl|fr1|chrUn (89321920-89321790) | |
| 284-404, gnl|hg17|chr19 (43806554-43806693) | |
| 284-404, gnl|Hg17|chr19 (43806557-43806677) | |
| 284-404, gnl|mm7|chr7 (25912688-25912552) | |
| 284-404, gnl|Mm7|chr7 (25912683-25912563) | |
| 284-404, gnl|oryCun1|scaffold_158450 (3189-3335) | |
| 284-404, gnl|panTro1|chr20 (40717365-40717504) | |
| 284-404, gnl|rheMac2|chr19 (44960289-44960428) | |
| 284-404, gnl|rn3|chr1 (84168206-84168067) | |
| 284-404, gnl|tetNig1|chr16 (6722203-6722331) | |
| 284-404, gnl|xenTro1|scaffold_572 (763134-763271) | |
| 617-756, gnl|bosTau2|chr18 (40883789-40883651) | |
| 617-756, gnl|canFam2|chr1 (117345148-117344969) | |
| 617-756, gnl|danRer3|chrUn (184051300-184051459) | |
| 617-756, gnl|dasNov1|scaffold_173872 (3231-3408) | |
| 617-756, gnl|echTel1|scaffold_289603 (75666-75486) | |
| 617-756, gnl|fr1|chrUn (89320913-89320775) | |
| 617-756, gnl|hg17|chr19 (43817450-43817629) | |
| 617-756, gnl|Hg17|chr19 (43817466-43817604) | |
| 617-756, gnl|mm7|chr7 (25907320-25907154) | |
| 617-756, gnl|Mm7|chr7 (25907305-25907167) | |
| 617-756, gnl|monDom2|scaffold_139 (646411-646567) | |
| 617-756, gnl|oryCun1|scaffold_158450 (7025-7198) | |
| 617-756, gnl|panTro1|chr20 (40727701-40727880) | |
| 617-756, gnl|rheMac2|chr19 (44970994-44971173) | |
| 617-756, gnl|rn3|chr1 (84163295-84163131) | |
| 617-756, gnl|tetNig1|chr16 (6723042-6723187) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 61-193, gnl|bosTau2|chr18 (40894680-40894548) | |
| 61-193, gnl|Hg17|chr19 (43801683-43801816) | |
| 61-193, gnl|Mm7|chr7 (25916492-25916358) | |
| 284-404, gnl|bosTau2|chr18 (40889866-40889746) | |
| 284-404, gnl|canFam2|chr1 (117351619-117351474) | |
| 284-404, gnl|danRer3|chrUn (184050018-184050157) | |
| 284-404, gnl|dasNov1|scaffold_59319 (6358-6511) | |
| 284-404, gnl|echTel1|scaffold_309490 (7839-7956) | |
| 284-404, gnl|fr1|chrUn (89321920-89321790) | |
| 284-404, gnl|hg17|chr19 (43806554-43806693) | |
| 284-404, gnl|Hg17|chr19 (43806557-43806677) | |
| 284-404, gnl|mm7|chr7 (25912688-25912552) | |
| 284-404, gnl|Mm7|chr7 (25912683-25912563) | |
| 284-404, gnl|oryCun1|scaffold_158450 (3189-3335) | |
| 284-404, gnl|panTro1|chr20 (40717365-40717504) | |
| 284-404, gnl|rheMac2|chr19 (44960289-44960428) | |
| 284-404, gnl|rn3|chr1 (84168206-84168067) | |
| 284-404, gnl|tetNig1|chr16 (6722203-6722331) | |
| 284-404, gnl|xenTro1|scaffold_572 (763134-763271) | |
| 617-756, gnl|bosTau2|chr18 (40883789-40883651) | |
| 617-756, gnl|canFam2|chr1 (117345148-117344969) | |
| 617-756, gnl|danRer3|chrUn (184051300-184051459) | |
| 617-756, gnl|dasNov1|scaffold_173872 (3231-3408) | |
| 617-756, gnl|echTel1|scaffold_289603 (75666-75486) | |
| 617-756, gnl|fr1|chrUn (89320913-89320775) | |
| 617-756, gnl|hg17|chr19 (43817450-43817629) | |
| 617-756, gnl|Hg17|chr19 (43817466-43817604) | |
| 617-756, gnl|mm7|chr7 (25907320-25907154) | |
| 617-756, gnl|Mm7|chr7 (25907305-25907167) | |
| 617-756, gnl|monDom2|scaffold_139 (646411-646567) | |
| 617-756, gnl|oryCun1|scaffold_158450 (7025-7198) | |
| 617-756, gnl|panTro1|chr20 (40727701-40727880) | |
| 617-756, gnl|rheMac2|chr19 (44970994-44971173) | |
| 617-756, gnl|rn3|chr1 (84163295-84163131) | |
| 617-756, gnl|tetNig1|chr16 (6723042-6723187) |
| Expressed library(ies): 55 entry(ies) | More info |
| Expressed library(ies): 55 entry(ies) | Help | Less info |
| cag (1.20956) | |
| lnt (1.13847) | |
| ese (1.01202) | |
| med (0.930016) | |
| cov (0.925069) | |
| fty (0.879198) | |
| ton (0.877501) | |
| csp (0.805932) | |
| ebs (0.709807) | |
| jca (0.683761) | |
| mcp (0.682594) | |
| cli (0.611247) | |
| eru (0.60024) | |
| eje (0.593003) | |
| col (0.585023) | |
| ecc (0.575175) | |
| cga (0.558191) | |
| nep (0.551775) | |
| eye (0.511509) | |
| nco (0.485201) | |
| ece (0.45861) | |
| eli (0.455443) | |
| mas (0.42061) | |
| jej (0.395687) | |
| elu (0.385356) | |
| bla (0.373042) | |
| cly (0.361925) | |
| fbs (0.350693) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| nbm (0.297974) | |
| fce (0.271592) | |
| ste (0.270416) | |
| pla (0.267344) | |
| ute (0.265569) | |
| eep (0.245128) | |
| nms (0.213858) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| rec (0.17307) | |
| nje (0.16592) | |
| mga (0.160205) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 55 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (1.20956) | |
| lnt (1.13847) | |
| ese (1.01202) | |
| med (0.930016) | |
| cov (0.925069) | |
| fty (0.879198) | |
| ton (0.877501) | |
| csp (0.805932) | |
| ebs (0.709807) | |
| jca (0.683761) | |
| mcp (0.682594) | |
| cli (0.611247) | |
| eru (0.60024) | |
| eje (0.593003) | |
| col (0.585023) | |
| ecc (0.575175) | |
| cga (0.558191) | |
| nep (0.551775) | |
| eye (0.511509) | |
| nco (0.485201) | |
| ece (0.45861) | |
| eli (0.455443) | |
| mas (0.42061) | |
| jej (0.395687) | |
| elu (0.385356) | |
| bla (0.373042) | |
| cly (0.361925) | |
| fbs (0.350693) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| nbm (0.297974) | |
| fce (0.271592) | |
| ste (0.270416) | |
| pla (0.267344) | |
| ute (0.265569) | |
| eep (0.245128) | |
| nms (0.213858) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| rec (0.17307) | |
| nje (0.16592) | |
| mga (0.160205) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |