Non-Coding RNA Search

Ss1.1-rjca23c_g14.5

Sequence:


               
               CATTCAGAGCTCCGACGACCTGCCTGCTGTGCAAGGCAGCTCCTCCTTCTCGCTGAAAGG
TTATCCTTCGCTTATCAGGAGCCAGAGCCCCAAAGCCCAGCCCCAGACTTGGAAATCTGG
CAAGCAGACTTTGCTGTCTCACTACCGGCCATTCTATGTCAACAAAGGCAACGGGATCGG
GTCCAACGAGGCCCCATGAGTTCCAGACAGGCAGGAACGAGGCACCGCCTCCCCTGCCCT
CCCCAGCCAGCCCTGCTGCTCTTGCGACTCTTCTCATCTGGGTGGGCAGGAGCCCGGCCC
TGTGCCTGCCCTCCTCCAGCCTTCGGCCCCCTCTCTCAGGGCCACCTGCCTGCCCCCCCA
CCAGCCACCTGTCAGCCACGCTCCATCCAGGTCCCCTTCCTGCTTTGTGACTAAGGGTCA
CCAGCTTTCCTGTGCTCAGAGGCTAACCCTCACGGGGGTGGGCGATAGGTGGGCTTTTCT
CCCCTAACCCACCAGTCCCACCTTTGGGGCGTGATCGTTGGGGCCAGTGGTGGGTACCCA
CGTGGTACCAGTCTGCCTTCCTCGCCCAGGCCCCTGCTGACTTCAGGCCTGTTGGCCATT
TCTCCCCAAGGCCCTTCACCCCAAGAGGCAGTGAGTGGGCGCCCATCTCCCAGCCATGCG
GGCCCAACTCTTCCCAGCAGCCTGGCCCCTAGGAGAAGACTTGTGCTCTGCCCTGGTCCT
ACCTACCAAGGCCAGCCTGGCAGGACCTGCAGCCCTTGGCCACCACCGAGGGGAGCCTCT
CAGCGTCTTGGCATCCTCCTGCCTGGCCTCGGATCACCCCACACCCTCTGTGGGTCTGCG
GTCCCTGAGGACCGGCTCTCCTGGCTGGCAGGATGATCTTTGCCAAGATACGTCTTTCTT
CTACCTGCTGAGATAAGCAATTCCCTTGACACAATCTACTCCACCCCAAGAAAGTAGCCC
AGCGGCCCCAAGGAAAACGTCGTTTATCTATAGAATTTCATTGGTTTTGTAACTAATTTC
ACTGGTTTCTCCCTGGCCACGGGAAGTGAGCAGGCCGGCTGTTTACAAGGATGCTATTTA
CAAGGGCGCCTTCCCCCTGGCCCGCGCCCTTTCCCCTGCCCATTGGGGTCTTCCCCTTCC
TTCTGTCTGCCCTCCTCGCTGCATGGTGTCAGTGGCCCAGGGCCTGCAGAGGACCCCAAA
CCGGGAGCAGCAAGGAGGGGTCCTTTTTCCTCCGGCCGCCCCACCCCGGGCCCGAGGGGG
CTCCCAGGAGGGGGCTGCTAGCAGGGGTGGGAGAGGGACGGAGACATTCAGCTTGGGCTT
CCCCTCCAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTCAGAGCTCCGACGACCTGCCTGCTGTGCAAGGCAGCTCCTCCTTCTCGCTGAAAGG
TTATCCTTCGCTTATCAGGAGCCAGAGCCCCAAAGCCCAGCCCCAGACTTGGAAATCTGG
CAAGCAGACTTTGCTGTCTCACTACCGGCCATTCTATGTCAACAAAGGCAACGGGATCGG
GTCCAACGAGGCCCCATGAGTTCCAGACAGGCAGGAACGAGGCACCGCCTCCCCTGCCCT
CCCCAGCCAGCCCTGCTGCTCTTGCGACTCTTCTCATCTGGGTGGGCAGGAGCCCGGCCC
TGTGCCTGCCCTCCTCCAGCCTTCGGCCCCCTCTCTCAGGGCCACCTGCCTGCCCCCCCA
CCAGCCACCTGTCAGCCACGCTCCATCCAGGTCCCCTTCCTGCTTTGTGACTAAGGGTCA
CCAGCTTTCCTGTGCTCAGAGGCTAACCCTCACGGGGGTGGGCGATAGGTGGGCTTTTCT
CCCCTAACCCACCAGTCCCACCTTTGGGGCGTGATCGTTGGGGCCAGTGGTGGGTACCCA
CGTGGTACCAGTCTGCCTTCCTCGCCCAGGCCCCTGCTGACTTCAGGCCTGTTGGCCATT
TCTCCCCAAGGCCCTTCACCCCAAGAGGCAGTGAGTGGGCGCCCATCTCCCAGCCATGCG
GGCCCAACTCTTCCCAGCAGCCTGGCCCCTAGGAGAAGACTTGTGCTCTGCCCTGGTCCT
ACCTACCAAGGCCAGCCTGGCAGGACCTGCAGCCCTTGGCCACCACCGAGGGGAGCCTCT
CAGCGTCTTGGCATCCTCCTGCCTGGCCTCGGATCACCCCACACCCTCTGTGGGTCTGCG
GTCCCTGAGGACCGGCTCTCCTGGCTGGCAGGATGATCTTTGCCAAGATACGTCTTTCTT
CTACCTGCTGAGATAAGCAATTCCCTTGACACAATCTACTCCACCCCAAGAAAGTAGCCC
AGCGGCCCCAAGGAAAACGTCGTTTATCTATAGAATTTCATTGGTTTTGTAACTAATTTC
ACTGGTTTCTCCCTGGCCACGGGAAGTGAGCAGGCCGGCTGTTTACAAGGATGCTATTTA
CAAGGGCGCCTTCCCCCTGGCCCGCGCCCTTTCCCCTGCCCATTGGGGTCTTCCCCTTCC
TTCTGTCTGCCCTCCTCGCTGCATGGTGTCAGTGGCCCAGGGCCTGCAGAGGACCCCAAA
CCGGGAGCAGCAAGGAGGGGTCCTTTTTCCTCCGGCCGCCCCACCCCGGGCCCGAGGGGG
CTCCCAGGAGGGGGCTGCTAGCAGGGGTGGGAGAGGGACGGAGACATTCAGCTTGGGCTT
CCCCTCCAGAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               378-613, - strand, RNAz p=0.999584
               

               
               784-900, - strand, RNAz p=0.999975

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               378-613, - strand, RNAz p=0.999584
               

               
               784-900, - strand, RNAz p=0.999975

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               136-280, gnl|bosTau2|chr15 (15827224-15827362)
               

               
               136-280, gnl|Hg17|chr11 (119488395-119488245)
               

               
               136-280, gnl|Mm7|chr9 (43269455-43269604)
               


               
               306-1058, gnl|bosTau2|chr15 (15827347-15828107)
               

               
               306-1058, gnl|Hg17|chr11 (119488269-119487488)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-280, gnl|bosTau2|chr15 (15827224-15827362)
               

               
               136-280, gnl|Hg17|chr11 (119488395-119488245)
               

               
               136-280, gnl|Mm7|chr9 (43269455-43269604)
               


               
               306-1058, gnl|bosTau2|chr15 (15827347-15828107)
               

               
               306-1058, gnl|Hg17|chr11 (119488269-119487488)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	378-613, - strand, RNAz p=0.999584
	784-900, - strand, RNAz p=0.999975

	136-280, gnl\|bosTau2\|chr15 (15827224-15827362)
	136-280, gnl\|Hg17\|chr11 (119488395-119488245)
	136-280, gnl\|Mm7\|chr9 (43269455-43269604)

	306-1058, gnl\|bosTau2\|chr15 (15827347-15828107)
	306-1058, gnl\|Hg17\|chr11 (119488269-119487488)