Non-Coding RNA Search

Ss1.1-rjca24c_e10.5

Sequence:


               
               GGCGCCGGGCGGCGGTCACGTATCTCAGGTTCCCCTGCTTCTTGACCGCGCAGTTAGGTT
CCTGTGCTCCGGGTCCCCACTGTTCCTGGCCATCATGCCGATGTTCGTGGTAAACACCAA
CGTTCCCCGCGCCTCTGTGCCGGACGGGTTCCTCTCCGAGCTGACTCAGCAGTTGGTGCA
GGCCATGGGCAAGCCGGCGCAGTACATCGCGGTGCACGTCGTCCCGGACCAGCTCATGGC
CTTCGGAGGGTCCAGCGAGCCGTGCGCCCTTTGCAGTCTGCATAGCATCGGCAAGATCGG
CGGCGCGCAGAACCGTTCCTACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAACGCTTGCG
CATCAGCCCGGACAGGATCTACATCAACTACTACGACATGAACGCGGCCAATGTGGGCTG
GAACGGCTCCACCTTCGCCTGAGGGCCGCACCCCAAGACTCCTTTGCTCTCGGCCTGGCG
CCGCCGGCTCTGTTTTCTGCCTGCCTCGCCCCTAGCGACCCCAGCTCCCGGAAGAGAGAA
ATAAACGGTGTGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCCGGGCGGCGGTCACGTATCTCAGGTTCCCCTGCTTCTTGACCGCGCAGTTAGGTT
CCTGTGCTCCGGGTCCCCACTGTTCCTGGCCATCATGCCGATGTTCGTGGTAAACACCAA
CGTTCCCCGCGCCTCTGTGCCGGACGGGTTCCTCTCCGAGCTGACTCAGCAGTTGGTGCA
GGCCATGGGCAAGCCGGCGCAGTACATCGCGGTGCACGTCGTCCCGGACCAGCTCATGGC
CTTCGGAGGGTCCAGCGAGCCGTGCGCCCTTTGCAGTCTGCATAGCATCGGCAAGATCGG
CGGCGCGCAGAACCGTTCCTACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAACGCTTGCG
CATCAGCCCGGACAGGATCTACATCAACTACTACGACATGAACGCGGCCAATGTGGGCTG
GAACGGCTCCACCTTCGCCTGAGGGCCGCACCCCAAGACTCCTTTGCTCTCGGCCTGGCG
CCGCCGGCTCTGTTTTCTGCCTGCCTCGCCCCTAGCGACCCCAGCTCCCGGAAGAGAGAA
ATAAACGGTGTGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50881974|gb|AAT85562.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50881974|gb|AAT85562.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               198-376, gnl|bosTau2|chr17 (41517772-41517950)
               

               
               198-376, gnl|Hg17|chr22 (22561509-22561686)
               

               
               198-376, gnl|Mm7|chr10 (75515518-75515337)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-376, gnl|bosTau2|chr17 (41517772-41517950)
               

               
               198-376, gnl|Hg17|chr22 (22561509-22561686)
               

               
               198-376, gnl|Mm7|chr10 (75515518-75515337)

Expressed library(ies): 54 entry(ies)

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Expressed library(ies): 54 entry(ies)

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               cag (2.26792)
               

               
               cov (1.71799)
               

               
               ece (1.37583)
               

               
               csp (1.28949)
               

               
               duo (1.03681)
               

               
               fcc (0.988924)
               

               
               eje (0.889504)
               

               
               fty (0.879198)
               

               
               mas (0.84122)
               

               
               amn (0.835422)
               

               
               nca (0.821243)
               

               
               elu (0.770713)
               

               
               eep (0.735384)
               

               
               eru (0.720288)
               

               
               ton (0.702001)
               

               
               nbm (0.695272)
               

               
               fhi (0.678311)
               

               
               cki (0.660939)
               

               
               fce (0.543183)
               

               
               ill (0.526778)
               

               
               mcp (0.511945)
               

               
               eye (0.511509)
               

               
               jca (0.45584)
               

               
               eli (0.455443)
               

               
               hyp (0.42851)
               

               
               lnt (0.426925)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               ese (0.379507)
               

               
               cly (0.361925)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               jej (0.296765)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 54 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (2.26792)
               

               
               cov (1.71799)
               

               
               ece (1.37583)
               

               
               csp (1.28949)
               

               
               duo (1.03681)
               

               
               fcc (0.988924)
               

               
               eje (0.889504)
               

               
               fty (0.879198)
               

               
               mas (0.84122)
               

               
               amn (0.835422)
               

               
               nca (0.821243)
               

               
               elu (0.770713)
               

               
               eep (0.735384)
               

               
               eru (0.720288)
               

               
               ton (0.702001)
               

               
               nbm (0.695272)
               

               
               fhi (0.678311)
               

               
               cki (0.660939)
               

               
               fce (0.543183)
               

               
               ill (0.526778)
               

               
               mcp (0.511945)
               

               
               eye (0.511509)
               

               
               jca (0.45584)
               

               
               eli (0.455443)
               

               
               hyp (0.42851)
               

               
               lnt (0.426925)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               ese (0.379507)
               

               
               cly (0.361925)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               jej (0.296765)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	198-376, gnl\|bosTau2\|chr17 (41517772-41517950)
	198-376, gnl\|Hg17\|chr22 (22561509-22561686)
	198-376, gnl\|Mm7\|chr10 (75515518-75515337)

	cag (2.26792)
	cov (1.71799)
	ece (1.37583)
	csp (1.28949)
	duo (1.03681)
	fcc (0.988924)
	eje (0.889504)
	fty (0.879198)
	mas (0.84122)
	amn (0.835422)
	nca (0.821243)
	elu (0.770713)
	eep (0.735384)
	eru (0.720288)
	ton (0.702001)
	nbm (0.695272)
	fhi (0.678311)
	cki (0.660939)
	fce (0.543183)
	ill (0.526778)
	mcp (0.511945)
	eye (0.511509)
	jca (0.45584)
	eli (0.455443)
	hyp (0.42851)
	lnt (0.426925)
	ute (0.398353)
	col (0.390016)
	nlu (0.383362)
	ese (0.379507)
	cly (0.361925)
	ebs (0.354904)
	fbs (0.350693)
	med (0.348756)
	ecc (0.345105)
	cut (0.339847)
	nje (0.33184)
	cje (0.330469)
	nco (0.323468)
	jej (0.296765)
	cga (0.279096)
	hlv (0.278513)
	nms (0.213858)
	fli (0.202881)
	nep (0.183925)
	rec (0.17307)
	cli (0.152812)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	ssp (0.13552)
	nmm (0.132802)
	bla (0.124347)
	pgl (0.118483)