Non-Coding RNA Search

Ss1.1-rjca24c_i14.5

Sequence:


               
               GGTCCCCACTCCCTGAGCTATTTCTCCACCGCCGTGTCCCGGCCCGACCGCGGGGACTCC
CGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCC
CCCAATCCGCGGATGGAGCCGCGGGCGCCGTGGATAGAGAAGGAGGGGCAGGAGTATTGG
GATGAGGAGACGCGGAAAGTCATGGGCAGCGCACAGACTTTCCGAGTGAACCTGCGCACA
GCTCTTGGCTACTACAACCAGAGCGTGGCCGGGTCTCACACCTTCCAGTGGATGTACGGC
TGCTACTTGGGACCAGACGGGCTCCTCCTCCGCGGGTACTATCAGTACGCCTACGACAGC
GCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCT
CAGATCACCAAGCGCAAGTGGGAGGCGGCCGATGCGGCGGAGCAGGAGAGGAGCTACCTG
CAGGGCACGTGTGTGGAGTGGCTCCAGAAATACCTGGAGATGGGGAAGGACACGCTGCAG
CGCGCAGAGCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACC
TTGAGGTGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCCCCACTCCCTGAGCTATTTCTCCACCGCCGTGTCCCGGCCCGACCGCGGGGACTCC
CGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCC
CCCAATCCGCGGATGGAGCCGCGGGCGCCGTGGATAGAGAAGGAGGGGCAGGAGTATTGG
GATGAGGAGACGCGGAAAGTCATGGGCAGCGCACAGACTTTCCGAGTGAACCTGCGCACA
GCTCTTGGCTACTACAACCAGAGCGTGGCCGGGTCTCACACCTTCCAGTGGATGTACGGC
TGCTACTTGGGACCAGACGGGCTCCTCCTCCGCGGGTACTATCAGTACGCCTACGACAGC
GCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCT
CAGATCACCAAGCGCAAGTGGGAGGCGGCCGATGCGGCGGAGCAGGAGAGGAGCTACCTG
CAGGGCACGTGTGTGGAGTGGCTCCAGAAATACCTGGAGATGGGGAAGGACACGCTGCAG
CGCGCAGAGCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACC
TTGAGGTGCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14194277|gb|AAK56325.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14194277|gb|AAK56325.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-272, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               5-272, gnl|Hg17|chr6 (30335574-30335841)
               

               
               5-272, gnl|Mm7|chr17 (33571220-33571487)
               


               
               305-555, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               305-555, gnl|Hg17|chr6 (31347071-31346829)
               

               
               305-555, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-272, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               5-272, gnl|Hg17|chr6 (30335574-30335841)
               

               
               5-272, gnl|Mm7|chr17 (33571220-33571487)
               


               
               305-555, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               305-555, gnl|Hg17|chr6 (31347071-31346829)
               

               
               305-555, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               med (0.232504)
               

               
               jca (0.22792)
               

               
               lnt (0.142308)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               lnt (0.142308)

	5-272, gnl\|bosTau2\|chr23 (21180741-21180474)
	5-272, gnl\|Hg17\|chr6 (30335574-30335841)
	5-272, gnl\|Mm7\|chr17 (33571220-33571487)

	305-555, gnl\|bosTau2\|chr20 (36655627-36655873)
	305-555, gnl\|Hg17\|chr6 (31347071-31346829)
	305-555, gnl\|Mm7\|chr17 (32077846-32077606)