Non-Coding RNA Search

Ss1.1-rjca24c_l23.5

Sequence:


               
               GCATGGCATACAAGATCACCCGGCCGCTGGCCAGTGCCAACAGTTGCCTGGACCCCGTGC
TCTACTTCCTGGCCGGGCAGAGGCTCGTGCGCTTTGCCCGGGACGCCNAGCCACCCACAG
ACGCCACCCCCACCGCCCAGGCCTGTCGCAGGCTGGGCCTGCGCAGGTCCCACGGAACTG
ACACGAAGAGGACAGAAGACTCGGCCAGCAGCGAGGACTCCTGGCGGACAGAGATCACAC
CGGCGCGTGGCGAAGACATCCGGCTGTAGGACCCGGACCCCTGGCGCCTGCGCACGCGTG
TGGGGGGCGGGGCTGCAGACGTGTTCAAGCCGGACAGTCTCCCTCGGTTTGGCCCATCAG
CGACTCANGCCAGATGGTCGGGAGAGCCGGGACCCCCATGCTCTGTCCCTTGGCCGGGGC
CCCGTCTGTCCTCCGTGGTCCAGGGAGCCCCGCAGTCCCCACACCCCTCACCGTTGGTAT
GTGTGAGTTGGGGGATGAGGTTTTAAGAAAGGCAGGGCTCGGCGCCTGGGCTGCCCCTGG
CCTGACTCCCTCACAGATGCGTGGCTGGGCCTGCCACGGTACCCAGGCTGGAGGCCGGAC
AGATTGAGTCCAGTGGAAAGATGGGTCCAGAGAGGCCAGTGACTTACGGAGATCACACAG
CTGAGCCTGGCCCTGTGCTACGGGGGAGGGGCGGGTGCAGGTTGAGCCAAGGACCCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATGGCATACAAGATCACCCGGCCGCTGGCCAGTGCCAACAGTTGCCTGGACCCCGTGC
TCTACTTCCTGGCCGGGCAGAGGCTCGTGCGCTTTGCCCGGGACGCCNAGCCACCCACAG
ACGCCACCCCCACCGCCCAGGCCTGTCGCAGGCTGGGCCTGCGCAGGTCCCACGGAACTG
ACACGAAGAGGACAGAAGACTCGGCCAGCAGCGAGGACTCCTGGCGGACAGAGATCACAC
CGGCGCGTGGCGAAGACATCCGGCTGTAGGACCCGGACCCCTGGCGCCTGCGCACGCGTG
TGGGGGGCGGGGCTGCAGACGTGTTCAAGCCGGACAGTCTCCCTCGGTTTGGCCCATCAG
CGACTCANGCCAGATGGTCGGGAGAGCCGGGACCCCCATGCTCTGTCCCTTGGCCGGGGC
CCCGTCTGTCCTCCGTGGTCCAGGGAGCCCCGCAGTCCCCACACCCCTCACCGTTGGTAT
GTGTGAGTTGGGGGATGAGGTTTTAAGAAAGGCAGGGCTCGGCGCCTGGGCTGCCCCTGG
CCTGACTCCCTCACAGATGCGTGGCTGGGCCTGCCACGGTACCCAGGCTGGAGGCCGGAC
AGATTGAGTCCAGTGGAAAGATGGGTCCAGAGAGGCCAGTGACTTACGGAGATCACACAG
CTGAGCCTGGCCCTGTGCTACGGGGGAGGGGCGGGTGCAGGTTGAGCCAAGGACCCCTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               533-652, - strand, RNAz p=0.816969

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               533-652, - strand, RNAz p=0.816969

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-716, gnl|bosTau2|chr15 (33443765-33443045)
               

               
               4-716, gnl|Hg17|chr11 (72623709-72624431)
               

               
               4-716, gnl|Mm7|chr7 (97044486-97043859)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-716, gnl|bosTau2|chr15 (33443765-33443045)
               

               
               4-716, gnl|Hg17|chr11 (72623709-72624431)
               

               
               4-716, gnl|Mm7|chr7 (97044486-97043859)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ton (0.1755)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               jca (0.11396)

	4-716, gnl\|bosTau2\|chr15 (33443765-33443045)
	4-716, gnl\|Hg17\|chr11 (72623709-72624431)
	4-716, gnl\|Mm7\|chr7 (97044486-97043859)