Non-Coding RNA Search

Ss1.1-rjca25c_k10.5

Sequence:


               
               TTCACTTGAGGCAGACAGAGCAAAGAGGGAAGCTCATGAGAGAGAAATGGCAGAACAGTT
TCGTTTGGAGCAGATCCGCAAAGAACAAGAAGAGGAACGTGAGGCCATCCGGCTTTCCTT
GGAGCAGGCCCTGCCTCCAGAGCCAAAGGAAGAAAATGCTGAGCCTGTGAGCAAACTGCG
GATCCGGACCCCCAGTGGCGAGTTCCTTGAACGGCGTTTCCTGGCCAGCAGTAAGCTCCA
GATCGTCTTTGATTTTGTAGCTTCCAAAGGATTTCCATGGGACGAATTCAAGCTACTGAG
TACCTTTCCTAGGAGAGATGTAACCCAGCTGGACCCAAATAAATCATTATTGGAGGTAAA
GTTGTTCCCTCAAGAAACCCTTTTCCTTGAAGCAAAAGAGTAAACACAGCCCAGCGGTGG
AACCAGCCATTCCTTGACAAGCCAGAGGCCTTGCTTCAAGAGAAGGGCTCCTTGCCAACC
CACCTACACGCTCGTCTCACTCAGTTCAGTGTCACACTTCTGCCTCTCGCAAGATTGCTG
GAAAAAAGTAATAATAAACATAGCTACTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACTTGAGGCAGACAGAGCAAAGAGGGAAGCTCATGAGAGAGAAATGGCAGAACAGTT
TCGTTTGGAGCAGATCCGCAAAGAACAAGAAGAGGAACGTGAGGCCATCCGGCTTTCCTT
GGAGCAGGCCCTGCCTCCAGAGCCAAAGGAAGAAAATGCTGAGCCTGTGAGCAAACTGCG
GATCCGGACCCCCAGTGGCGAGTTCCTTGAACGGCGTTTCCTGGCCAGCAGTAAGCTCCA
GATCGTCTTTGATTTTGTAGCTTCCAAAGGATTTCCATGGGACGAATTCAAGCTACTGAG
TACCTTTCCTAGGAGAGATGTAACCCAGCTGGACCCAAATAAATCATTATTGGAGGTAAA
GTTGTTCCCTCAAGAAACCCTTTTCCTTGAAGCAAAAGAGTAAACACAGCCCAGCGGTGG
AACCAGCCATTCCTTGACAAGCCAGAGGCCTTGCTTCAAGAGAAGGGCTCCTTGCCAACC
CACCTACACGCTCGTCTCACTCAGTTCAGTGTCACACTTCTGCCTCTCGCAAGATTGCTG
GAAAAAAGTAATAATAAACATAGCTACTTAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13399997|pdb|1H8C|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13399997|pdb|1H8C|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               359-478, - strand, RNAz p=0.592388

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-478, - strand, RNAz p=0.592388

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               320-573, gnl|bosTau2|chr3 (65955396-65955144)
               

               
               320-573, gnl|Hg17|chr1 (50619216-50618965)
               

               
               320-573, gnl|Mm7|chr4 (109338238-109338486)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               320-573, gnl|bosTau2|chr3 (65955396-65955144)
               

               
               320-573, gnl|Hg17|chr1 (50619216-50618965)
               

               
               320-573, gnl|Mm7|chr4 (109338238-109338486)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jca (0.22792)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               sug (0.127291)

	320-573, gnl\|bosTau2\|chr3 (65955396-65955144)
	320-573, gnl\|Hg17\|chr1 (50619216-50618965)
	320-573, gnl\|Mm7\|chr4 (109338238-109338486)