Non-Coding RNA Search

Ss1.1-rjca28c_k20.5

Sequence:


               
               GCTTCCGGCCGTCCCGCGCCCTCCCGGCCCAGCCTCCTGAGCCTTCGGAGCGGGCGGCGC
CCCAGCCCAGCTCCGGGGAGACCTGAGCCGCGATGCCTGGGGGGTGCTCCCGGGGCCCGG
CCGCCGGGGACGGGCGGCTGCGGCTGGCGCGCCTGGCGCTGGTCCTCCTGGGCTGGGTCT
CTTCGTCCTCCCTCACCTCTTCGGCGTCCTCTACCTCCTCGGCGTCGTTCCCGGCCTCCG
CGGCGTCCGCCCTGCCCCCGCTGCCGGGCCGCTGCCCCCAGCCGTGCGAGTGCTCCGAGG
CGGCGCGCACCGTCAAGTGCGTGGGCCGCAACCTGACCGAGGTGCCCGCGGATCTGCCCC
CCTACGTGCGTACCCTTTTCCTCACCGGCAATCAGCTGGCCGTGCTCCCCACTGGCGCCT
TCGCCCGCCGGCCGCCGCTGGCCGAGCTGTCTGCACTCAACCTCAGTGGCAGCCGCCTGA
CGGAGGTGCAAGCCGGCGCCTTCGAGCACCTGCCCAGCCTACGCCTGCTCGACCTCAGCC
ACAACCCACTGGCCAACCTCAGCGCCTTCGCCTTCTCGGGCAGCAACGCCAGCGTCGCGG
CCCCCAGCCCCTTGGTGGACCTGATCCTGAACCACATTGTGACCTCGGCGGCCCAGCGGC
AGAACCGGAGCTTTGAGGGGATGGTGGCAGCCGCCCTGCGAGCGGGCCACGCGCTGCGCG
GGCTCCGCCGCCTGGAGCTGGCCAGCAACCACCTCCTCTACCTGCCCCTGGACGTCCTGG
CCCAGCTACCAGACCTCCGGCACCTGGACCTGCGCAACAACTCTCTGGTGAGCCTGACTT
ATGTGTTCTTCCGCAACCTGACACACCTCGAAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCCGGCCGTCCCGCGCCCTCCCGGCCCAGCCTCCTGAGCCTTCGGAGCGGGCGGCGC
CCCAGCCCAGCTCCGGGGAGACCTGAGCCGCGATGCCTGGGGGGTGCTCCCGGGGCCCGG
CCGCCGGGGACGGGCGGCTGCGGCTGGCGCGCCTGGCGCTGGTCCTCCTGGGCTGGGTCT
CTTCGTCCTCCCTCACCTCTTCGGCGTCCTCTACCTCCTCGGCGTCGTTCCCGGCCTCCG
CGGCGTCCGCCCTGCCCCCGCTGCCGGGCCGCTGCCCCCAGCCGTGCGAGTGCTCCGAGG
CGGCGCGCACCGTCAAGTGCGTGGGCCGCAACCTGACCGAGGTGCCCGCGGATCTGCCCC
CCTACGTGCGTACCCTTTTCCTCACCGGCAATCAGCTGGCCGTGCTCCCCACTGGCGCCT
TCGCCCGCCGGCCGCCGCTGGCCGAGCTGTCTGCACTCAACCTCAGTGGCAGCCGCCTGA
CGGAGGTGCAAGCCGGCGCCTTCGAGCACCTGCCCAGCCTACGCCTGCTCGACCTCAGCC
ACAACCCACTGGCCAACCTCAGCGCCTTCGCCTTCTCGGGCAGCAACGCCAGCGTCGCGG
CCCCCAGCCCCTTGGTGGACCTGATCCTGAACCACATTGTGACCTCGGCGGCCCAGCGGC
AGAACCGGAGCTTTGAGGGGATGGTGGCAGCCGCCCTGCGAGCGGGCCACGCGCTGCGCG
GGCTCCGCCGCCTGGAGCTGGCCAGCAACCACCTCCTCTACCTGCCCCTGGACGTCCTGG
CCCAGCTACCAGACCTCCGGCACCTGGACCTGCGCAACAACTCTCTGGTGAGCCTGACTT
ATGTGTTCTTCCGCAACCTGACACACCTCGAAAGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q13641_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q13641_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               353-472, - strand, RNAz p=0.606515

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-472, - strand, RNAz p=0.606515

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-875, gnl|bosTau2|chr9 (9477970-9478848)
               

               
               1-875, gnl|Hg17|chr6 (83131307-83132183)
               

               
               1-875, gnl|Mm7|chr9 (85942109-85942999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-875, gnl|bosTau2|chr9 (9477970-9478848)
               

               
               1-875, gnl|Hg17|chr6 (83131307-83132183)
               

               
               1-875, gnl|Mm7|chr9 (85942109-85942999)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)
               

               
               cty (0.10408)

	1-875, gnl\|bosTau2\|chr9 (9477970-9478848)
	1-875, gnl\|Hg17\|chr6 (83131307-83132183)
	1-875, gnl\|Mm7\|chr9 (85942109-85942999)