Non-Coding RNA Search

Ss1.1-rjca29c_p6.5

Sequence:


               
               AGTGGCTTGGATCTGGCATTCCTATGTCTCTGGCGTAGGCCAGCAGCTGCAACTCCAATT
CAACCCCTAGCCTGGGAACTTCCATATGCTGCAGGTGCAGCCCTAAAAAGAAAAAGAAGA
AAAAAAAATGTACCATCTAATTCATCAGTGTTTAGATATGAAAACAAAAATTATCATATA
TGAAACAGTGTGGACACCTGAAATACATGTCCCCAATGGCCTTGCAACCAACCAACTTGG
AAGGAGAACTTCAAAATTGACAATATCCCAGAGATATTCTATCCTAAGTTATAACTGTGG
TGCCTTTGGAAAGATAATCAACTTTCTCATATTATTAGCAAATGTATTATTACAGACGAA
GTTGCTATATGAGATTACAATAGAATCAAAGAGTCATTGCAGCTTCTGAAGGTGATGGAC
TTAACTTTCAGATATTGCTTAATACCTGGGAAACCCTGGGAACCAGGCCAAGTCAGTTTA
ACAAAGCTTTTACTTTTCAGCCAGCTGAGATGGTGGTTTCTATAAAGTCTGGATTTTTCA
GAGAATTCTTTAATGGCCCCAGTGAAATTTGCCTTTTAAAAATTATAGGAAGATTAAATA
CATATTCTGAAACATCTGTCACTCATAAAAGAACAGAGAAACCTATTAAAAATAAAGCTG
TCTTATGTGTTTAGACTTTAGGAGCATTCAGGTGAACTGAGGACAAGAAAGAAAATTTTT
TTCTTAATTAACCAAAGGACTAGAAAGTAGCTAATATGAAAGCAGAACCTTTTCTTTATT
AAGCTCAAGGATAGCTATATTGAGTACAGGGCATTTAGAATCTCAAGGATAGCCATAGTA
TCGCTGAGGAAGGAGGAATTTTTGAGGACATTTCATTCAAATTCATTATCTTTATTTTTC
AGGTGCAAAAGGAAATTGAAGACTAGAGAAATAAAAAGAAAGTTCTCATAGTCAGATAAG
TAGTGAAATTGCTTAGACACCAAAATCCTTACTAGAATATAAATCACCAGTTCTTGGTGG
GGGGAGTGTTACTTGTGGATTATTTTCCAAAGGGAAATAAACTTTTTGTCTTATTTATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGCTTGGATCTGGCATTCCTATGTCTCTGGCGTAGGCCAGCAGCTGCAACTCCAATT
CAACCCCTAGCCTGGGAACTTCCATATGCTGCAGGTGCAGCCCTAAAAAGAAAAAGAAGA
AAAAAAAATGTACCATCTAATTCATCAGTGTTTAGATATGAAAACAAAAATTATCATATA
TGAAACAGTGTGGACACCTGAAATACATGTCCCCAATGGCCTTGCAACCAACCAACTTGG
AAGGAGAACTTCAAAATTGACAATATCCCAGAGATATTCTATCCTAAGTTATAACTGTGG
TGCCTTTGGAAAGATAATCAACTTTCTCATATTATTAGCAAATGTATTATTACAGACGAA
GTTGCTATATGAGATTACAATAGAATCAAAGAGTCATTGCAGCTTCTGAAGGTGATGGAC
TTAACTTTCAGATATTGCTTAATACCTGGGAAACCCTGGGAACCAGGCCAAGTCAGTTTA
ACAAAGCTTTTACTTTTCAGCCAGCTGAGATGGTGGTTTCTATAAAGTCTGGATTTTTCA
GAGAATTCTTTAATGGCCCCAGTGAAATTTGCCTTTTAAAAATTATAGGAAGATTAAATA
CATATTCTGAAACATCTGTCACTCATAAAAGAACAGAGAAACCTATTAAAAATAAAGCTG
TCTTATGTGTTTAGACTTTAGGAGCATTCAGGTGAACTGAGGACAAGAAAGAAAATTTTT
TTCTTAATTAACCAAAGGACTAGAAAGTAGCTAATATGAAAGCAGAACCTTTTCTTTATT
AAGCTCAAGGATAGCTATATTGAGTACAGGGCATTTAGAATCTCAAGGATAGCCATAGTA
TCGCTGAGGAAGGAGGAATTTTTGAGGACATTTCATTCAAATTCATTATCTTTATTTTTC
AGGTGCAAAAGGAAATTGAAGACTAGAGAAATAAAAAGAAAGTTCTCATAGTCAGATAAG
TAGTGAAATTGCTTAGACACCAAAATCCTTACTAGAATATAAATCACCAGTTCTTGGTGG
GGGGAGTGTTACTTGTGGATTATTTTCCAAAGGGAAATAAACTTTTTGTCTTATTTATGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               205-1080, gnl|bosTau2|chr6 (1144326-1145196)
               

               
               205-1080, gnl|Hg17|chr4 (122313237-122312338)
               

               
               205-1080, gnl|Mm7|chr6 (65693865-65694848)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               205-1080, gnl|bosTau2|chr6 (1144326-1145196)
               

               
               205-1080, gnl|Hg17|chr4 (122313237-122312338)
               

               
               205-1080, gnl|Mm7|chr6 (65693865-65694848)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               jca (0.11396)

	205-1080, gnl\|bosTau2\|chr6 (1144326-1145196)
	205-1080, gnl\|Hg17\|chr4 (122313237-122312338)
	205-1080, gnl\|Mm7\|chr6 (65693865-65694848)