Non-Coding RNA Search

Ss1.1-rjca30c_k17.5

Sequence:


               
               AATTCTAGTATTTTCTTCACTCACTCTAGTGAATCATCTTTGTATTACACTCTGGAAATT
CTTACAAAAGGCCAGTGGGTCATATCACTTTGAGAACTGGATAAAGATAAGGGACATAGA
CCACCATGCTTCTAAACATGTGCACACGCCTCTACATGCCAGGACAGATGTGCATTTCCA
GAGGTTTGGGGTTCTCTGAAACCAACTCCTAGGCCACCCCAGTGATGTCGCAGTGACCCT
CACATTAAGAATTTATTCCCTAGAAGGGAAAAAAACAGCAAATCATATTTGAAATGAGAA
GAGAATGGATAACTAGAAGATGTCTGTGAATTTTGGTTTACATGTGACCATTTTTGATTT
CTGAGGAGTAAAAGGAATTTGTTCTTTTGGTCTTGTTCTGTAGAATGTTACATGGGGTTT
CACATGTGGGCAACTAAAATTTTCTTTTCAATGAATATTTAACATATCTCTCAATATAGT
TCCTCAAGCTTTTGGTAAATGTGCATTGTTCTAGGTATCACAATTTTTTTTCTGGTTTAA
ATACTTTTCATTTTTCCTCCATGTAAAATAGAATAGTTGTTGAACTTTGCATTGAAAATC
TTCTTGATGTTAACAACACTTCTTTTATTATTACTTTCCCTGTTGCTTTAAATAACACAT
TTATTTTGAATTCTGCTTCTGGTCGAGTTGCAAAATCTATCAGAAAGTTATCCTGGGTCT
CAGCAGTTTGTTAGATATTGCTGCCACATAAATATTGTAATGGAAGTTAAATAAAAATCT
TCTTAACATTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCTAGTATTTTCTTCACTCACTCTAGTGAATCATCTTTGTATTACACTCTGGAAATT
CTTACAAAAGGCCAGTGGGTCATATCACTTTGAGAACTGGATAAAGATAAGGGACATAGA
CCACCATGCTTCTAAACATGTGCACACGCCTCTACATGCCAGGACAGATGTGCATTTCCA
GAGGTTTGGGGTTCTCTGAAACCAACTCCTAGGCCACCCCAGTGATGTCGCAGTGACCCT
CACATTAAGAATTTATTCCCTAGAAGGGAAAAAAACAGCAAATCATATTTGAAATGAGAA
GAGAATGGATAACTAGAAGATGTCTGTGAATTTTGGTTTACATGTGACCATTTTTGATTT
CTGAGGAGTAAAAGGAATTTGTTCTTTTGGTCTTGTTCTGTAGAATGTTACATGGGGTTT
CACATGTGGGCAACTAAAATTTTCTTTTCAATGAATATTTAACATATCTCTCAATATAGT
TCCTCAAGCTTTTGGTAAATGTGCATTGTTCTAGGTATCACAATTTTTTTTCTGGTTTAA
ATACTTTTCATTTTTCCTCCATGTAAAATAGAATAGTTGTTGAACTTTGCATTGAAAATC
TTCTTGATGTTAACAACACTTCTTTTATTATTACTTTCCCTGTTGCTTTAAATAACACAT
TTATTTTGAATTCTGCTTCTGGTCGAGTTGCAAAATCTATCAGAAAGTTATCCTGGGTCT
CAGCAGTTTGTTAGATATTGCTGCCACATAAATATTGTAATGGAAGTTAAATAAAAATCT
TCTTAACATTTAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               81-781, gnl|bosTau2|chr7 (23574221-23573516)
               

               
               81-781, gnl|Hg17|chr4 (157015095-157015805)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-781, gnl|bosTau2|chr7 (23574221-23573516)
               

               
               81-781, gnl|Hg17|chr4 (157015095-157015805)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	81-781, gnl\|bosTau2\|chr7 (23574221-23573516)
	81-781, gnl\|Hg17\|chr4 (157015095-157015805)

	mgp (0.230681)
	gul (0.177588)
	fco (0.157208)
	med (0.116252)
	jca (0.11396)