Non-Coding RNA Search

Ss1.1-rjca30c_k23.5

Sequence:


               
               AGAAATGCCACACTTCATTGTTCTTTTTCCATCTTTTCAGCAATTTCCTGATCAAATCGT
AGGATTTGTTCCAAGAAAGCATGTCGCTACTGCCTCCGGGGTCTACAGTTACGGAGGTTT
TGAGCTGCACACACCAGGGTTTGGAAACGGTGACCATTACTCTCTGGTCCTGATTGGAGC
GTCATTCTTCAACAGCAAATACCTTGACCTCTTTCAGAGGCAACCTGCCGCCGTCCACGC
TTTGTTAGATGAAACACAGAACTGTGATGACATCGCCATGAATTTTCTCATCGCCAAGCA
CACTGGGAAGACCTCAGGAGTGTTTGTGAAACCATTTCTTAGGGAAAGCAGGTCCTCTGG
AACCAACGGTGGCTATTCCGGAATGTGGCATCGAGCCGAGCACTTTCTGCAGAGGTCTTA
CTGTATCAATAAGCTCGTTCACATCTATGACAGCATGCCCTTAAGATACTCCAATATTAT
GATTTCTCAGTTTGGTTTTCCATATGCCAACCACAAAAGTAAACTGTGAAAGGAAAAACA
AACAAAAACGAACCTCCGAACTGCTTAGTATTTGAGTAGCTCCTTCAGGCTGTGGTTGGT
TTTTTAATTTTTAAATTTTTTTTTTTTTAAGCAACGTCATGAATGTTTTTTTCCACGCCA
GAAGTCTCTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATGCCACACTTCATTGTTCTTTTTCCATCTTTTCAGCAATTTCCTGATCAAATCGT
AGGATTTGTTCCAAGAAAGCATGTCGCTACTGCCTCCGGGGTCTACAGTTACGGAGGTTT
TGAGCTGCACACACCAGGGTTTGGAAACGGTGACCATTACTCTCTGGTCCTGATTGGAGC
GTCATTCTTCAACAGCAAATACCTTGACCTCTTTCAGAGGCAACCTGCCGCCGTCCACGC
TTTGTTAGATGAAACACAGAACTGTGATGACATCGCCATGAATTTTCTCATCGCCAAGCA
CACTGGGAAGACCTCAGGAGTGTTTGTGAAACCATTTCTTAGGGAAAGCAGGTCCTCTGG
AACCAACGGTGGCTATTCCGGAATGTGGCATCGAGCCGAGCACTTTCTGCAGAGGTCTTA
CTGTATCAATAAGCTCGTTCACATCTATGACAGCATGCCCTTAAGATACTCCAATATTAT
GATTTCTCAGTTTGGTTTTCCATATGCCAACCACAAAAGTAAACTGTGAAAGGAAAAACA
AACAAAAACGAACCTCCGAACTGCTTAGTATTTGAGTAGCTCCTTCAGGCTGTGGTTGGT
TTTTTAATTTTTAAATTTTTTTTTTTTTAAGCAACGTCATGAATGTTTTTTTCCACGCCA
GAAGTCTCTACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1945404|gb|AAB93669.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1945404|gb|AAB93669.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-154, - strand, RNAz p=0.821373

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-154, - strand, RNAz p=0.821373

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-672, gnl|bosTau2|chr3 (38030670-38031339)
               

               
               1-672, gnl|Hg17|chr1 (101052047-101051405)
               

               
               1-672, gnl|Mm7|chr3 (115801884-115802547)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr3 (38030670-38031339)
               

               
               1-672, gnl|Hg17|chr1 (101052047-101051405)
               

               
               1-672, gnl|Mm7|chr3 (115801884-115802547)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               jca (0.11396)

	1-672, gnl\|bosTau2\|chr3 (38030670-38031339)
	1-672, gnl\|Hg17\|chr1 (101052047-101051405)
	1-672, gnl\|Mm7\|chr3 (115801884-115802547)