Non-Coding RNA Search

Ss1.1-rjca31c_a5.5

Sequence:


               
               GGCTTCTCGTCATCAGGGGGGCAATCAATGAAGTCAGCCAGCATGGCAGCTGTGTCATCC
TGCTCCTTTTCCTGGAGAGCCGTGGACTCTGTCTCCGTCTCCATTTCTTCTGCTGCAGAT
GTCTCTGGTGGGGGTGGCACCTTGTCACCCCCACCCTCAGCCCCCTCTTCCAACAGGGTT
GGGGGCACAGAGGGCTCCTCTTCCACAAGCTCCTGGGGAGGTGGTGCTGTGGGGGGGCTC
CCCGCTTCCCTCTCTGCCTCCCCCTGTGCAGGGAGTGCCTCCGGGACCAATGTGGGGGCC
GTCTCAGGCCCAGGCGCCTCCTCGGCCCCCGGCTCCTCCACTTCCAACAGCAGGCCGGGC
TCTGGTTCTGGCTCAGGCTGCACCTTGGGGGACTCGGCGGGGGGCAGAGCTGGAGGCAGG
CTTGGGGGAGGAGGCCCCCCTTCTTCTACCTCCGCACCTGCCGAGCCAAACTCCAACTCT
TCCACCTCTTCCAACTCTTCCTCCTCTTCCTCCTCCTCGTCCTCTTCCTCTTCCTCTAAC
TCACCTTCCTCTTCCTCAAATTCCTCCTCGAACTCTTCTTCCTCTTCCTCCTCTTCTTCA
AAATACTCTTCTTCATCCTCCTCCTCTTCCTCAAAGTCTTCCTCCTCCTCCTCTTCCTCT
TCTTCTTCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTCTCGTCATCAGGGGGGCAATCAATGAAGTCAGCCAGCATGGCAGCTGTGTCATCC
TGCTCCTTTTCCTGGAGAGCCGTGGACTCTGTCTCCGTCTCCATTTCTTCTGCTGCAGAT
GTCTCTGGTGGGGGTGGCACCTTGTCACCCCCACCCTCAGCCCCCTCTTCCAACAGGGTT
GGGGGCACAGAGGGCTCCTCTTCCACAAGCTCCTGGGGAGGTGGTGCTGTGGGGGGGCTC
CCCGCTTCCCTCTCTGCCTCCCCCTGTGCAGGGAGTGCCTCCGGGACCAATGTGGGGGCC
GTCTCAGGCCCAGGCGCCTCCTCGGCCCCCGGCTCCTCCACTTCCAACAGCAGGCCGGGC
TCTGGTTCTGGCTCAGGCTGCACCTTGGGGGACTCGGCGGGGGGCAGAGCTGGAGGCAGG
CTTGGGGGAGGAGGCCCCCCTTCTTCTACCTCCGCACCTGCCGAGCCAAACTCCAACTCT
TCCACCTCTTCCAACTCTTCCTCCTCTTCCTCCTCCTCGTCCTCTTCCTCTTCCTCTAAC
TCACCTTCCTCTTCCTCAAATTCCTCCTCGAACTCTTCTTCCTCTTCCTCCTCTTCTTCA
AAATACTCTTCTTCATCCTCCTCCTCTTCCTCAAAGTCTTCCTCCTCCTCCTCTTCCTCT
TCTTCTTCCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61870670|ref|XP_591039.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870670|ref|XP_591039.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               93-291, - strand, RNAz p=0.999236
               

               
               103-269, - strand, RNAz p=0.976116

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-291, - strand, RNAz p=0.999236
               

               
               103-269, - strand, RNAz p=0.976116

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               93-330, gnl|bosTau2|chr19 (14526060-14525824)
               

               
               93-330, gnl|canFam2|chr5 (34856383-34856193)
               

               
               93-330, gnl|dasNov1|scaffold_213451 (1995-2125)
               

               
               93-330, gnl|echTel1|scaffold_294094 (37726-37542)
               

               
               93-330, gnl|hg17|chr17 (4521741-4521925)
               

               
               93-330, gnl|loxAfr1|scaffold_15676 (73802-73986)
               

               
               93-330, gnl|mm7|chr11 (70475342-70475517)
               

               
               93-330, gnl|monDom2|scaffold_66 (3698899-3698720)
               

               
               93-330, gnl|oryCun1|scaffold_139680 (3617-3460)
               

               
               93-330, gnl|panTro1|chr19 (4833503-4833687)
               

               
               93-330, gnl|rheMac2|chr16 (4458475-4458659)
               

               
               93-330, gnl|rn3|chr10 (57234383-57234564)
               

               
               93-330, gnl|xenTro1|scaffold_575 (63832-63988)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-330, gnl|bosTau2|chr19 (14526060-14525824)
               

               
               93-330, gnl|canFam2|chr5 (34856383-34856193)
               

               
               93-330, gnl|dasNov1|scaffold_213451 (1995-2125)
               

               
               93-330, gnl|echTel1|scaffold_294094 (37726-37542)
               

               
               93-330, gnl|hg17|chr17 (4521741-4521925)
               

               
               93-330, gnl|loxAfr1|scaffold_15676 (73802-73986)
               

               
               93-330, gnl|mm7|chr11 (70475342-70475517)
               

               
               93-330, gnl|monDom2|scaffold_66 (3698899-3698720)
               

               
               93-330, gnl|oryCun1|scaffold_139680 (3617-3460)
               

               
               93-330, gnl|panTro1|chr19 (4833503-4833687)
               

               
               93-330, gnl|rheMac2|chr16 (4458475-4458659)
               

               
               93-330, gnl|rn3|chr10 (57234383-57234564)
               

               
               93-330, gnl|xenTro1|scaffold_575 (63832-63988)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	93-291, - strand, RNAz p=0.999236
	103-269, - strand, RNAz p=0.976116

	93-330, gnl\|bosTau2\|chr19 (14526060-14525824)
	93-330, gnl\|canFam2\|chr5 (34856383-34856193)
	93-330, gnl\|dasNov1\|scaffold_213451 (1995-2125)
	93-330, gnl\|echTel1\|scaffold_294094 (37726-37542)
	93-330, gnl\|hg17\|chr17 (4521741-4521925)
	93-330, gnl\|loxAfr1\|scaffold_15676 (73802-73986)
	93-330, gnl\|mm7\|chr11 (70475342-70475517)
	93-330, gnl\|monDom2\|scaffold_66 (3698899-3698720)
	93-330, gnl\|oryCun1\|scaffold_139680 (3617-3460)
	93-330, gnl\|panTro1\|chr19 (4833503-4833687)
	93-330, gnl\|rheMac2\|chr16 (4458475-4458659)
	93-330, gnl\|rn3\|chr10 (57234383-57234564)
	93-330, gnl\|xenTro1\|scaffold_575 (63832-63988)