Non-Coding RNA Search

Ss1.1-rjca31c_h5.5

Sequence:


               
               GCTGCTTGTCTTCCTATCGATGATGTATTAAGAATTCAGCTCCTTAAAATTGGCAGTGCC
ATCCAGCGACTTCGCTGTGAACTAGACATCATGAACAAATGTACATCTCTTTGCTGTAAA
CAATGTCAAGAAACAGAAATAACAACCAAAAATGAAATATTCAGTTTATCTTTATGTGGG
CCGATGGCAGCTTACGTGAATCCTCATGGATATGTGCATGAGACGCTTACCGTGTATAAG
GCCTCCAACTTGAATCTGATAGGTCGTCCTTCAACAGAGCACAGCTGGTTTCCTGGGTAT
GCTTGGACCATTGCTCAGTGTAAGATCTGTGCGAGCCATATTGGATGGAAGTTTACAGCC
ACCAAGAAAGACATGTCACCTCAAAAATTCTGGGGTTTGACTCGATCTGCTCTGTTGCCC
ACAATCCCAGACACTGAAGATGACATAAGCCCAGACAAAGTAATACTCTGCTTATAAACA
AATATGCTAGAGATAGTTATTTAACAAATGGATATTCTAACATCAGATCTGCTTTGGATA
TTACTGCTTTTGATGCATACCTAAGTAAAAGGCAACATTACTTGGAAGGTTGCAGTTTCT
TAGTCAAACAGTATTTGAAGATTTAAACTAAAATATACTATTGAAGAGGATGAGAAACAG
TCTAGAATACTTGGTTTTTAGGAATGTCTACTTTAGTAGCTTGGTGCCATTATCCTGTGG
TGTCTGATATGCCTGGTAGCATGTCACCAGTAGTAAGAAGGGGTTTATCATTTGATCCTG
ACACCTGGAACAAAGTTTGGATCAGTGCTCCAAACAGCGGAAGTTCCAAAAGCAAGGGGT
GCCAAGCACAGGTACCTATTCCTTTTTGAAAGAGGCAAGGCAATGTACATTATTTTAAAA
GGGCTTTGTTCATTTTGATTTTCTTTAGTTCCCGAGATACTGATTTGTAAATTTTGAAAA
TATTAAAAGAGTTATAATATTCGGTTTGAGCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCTTGTCTTCCTATCGATGATGTATTAAGAATTCAGCTCCTTAAAATTGGCAGTGCC
ATCCAGCGACTTCGCTGTGAACTAGACATCATGAACAAATGTACATCTCTTTGCTGTAAA
CAATGTCAAGAAACAGAAATAACAACCAAAAATGAAATATTCAGTTTATCTTTATGTGGG
CCGATGGCAGCTTACGTGAATCCTCATGGATATGTGCATGAGACGCTTACCGTGTATAAG
GCCTCCAACTTGAATCTGATAGGTCGTCCTTCAACAGAGCACAGCTGGTTTCCTGGGTAT
GCTTGGACCATTGCTCAGTGTAAGATCTGTGCGAGCCATATTGGATGGAAGTTTACAGCC
ACCAAGAAAGACATGTCACCTCAAAAATTCTGGGGTTTGACTCGATCTGCTCTGTTGCCC
ACAATCCCAGACACTGAAGATGACATAAGCCCAGACAAAGTAATACTCTGCTTATAAACA
AATATGCTAGAGATAGTTATTTAACAAATGGATATTCTAACATCAGATCTGCTTTGGATA
TTACTGCTTTTGATGCATACCTAAGTAAAAGGCAACATTACTTGGAAGGTTGCAGTTTCT
TAGTCAAACAGTATTTGAAGATTTAAACTAAAATATACTATTGAAGAGGATGAGAAACAG
TCTAGAATACTTGGTTTTTAGGAATGTCTACTTTAGTAGCTTGGTGCCATTATCCTGTGG
TGTCTGATATGCCTGGTAGCATGTCACCAGTAGTAAGAAGGGGTTTATCATTTGATCCTG
ACACCTGGAACAAAGTTTGGATCAGTGCTCCAAACAGCGGAAGTTCCAAAAGCAAGGGGT
GCCAAGCACAGGTACCTATTCCTTTTTGAAAGAGGCAAGGCAATGTACATTATTTTAAAA
GGGCTTTGTTCATTTTGATTTTCTTTAGTTCCCGAGATACTGATTTGTAAATTTTGAAAA
TATTAAAAGAGTTATAATATTCGGTTTGAGCCCCAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               462-747, gnl|bosTau2|chr15 (51778211-51778498)
               

               
               462-747, gnl|Hg17|chr3 (3167564-3167267)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               462-747, gnl|bosTau2|chr15 (51778211-51778498)
               

               
               462-747, gnl|Hg17|chr3 (3167564-3167267)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               pro (0.512033)
               

               
               isp (0.451128)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               tra (0.246184)
               

               
               jca (0.22792)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               isp (0.451128)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               tra (0.246184)
               

               
               jca (0.22792)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	462-747, gnl\|bosTau2\|chr15 (51778211-51778498)
	462-747, gnl\|Hg17\|chr3 (3167564-3167267)

	pro (0.512033)
	isp (0.451128)
	lin (0.291206)
	ssp (0.271039)
	tra (0.246184)
	jca (0.22792)
	aor (0.195274)
	fhi (0.169578)
	fco (0.157208)
	tbr (0.154178)
	liv (0.146284)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	ebs (0.118301)
	spc (0.113366)
	cty (0.10408)
	ldo (0.0970026)