Ss1.1-rjca31c_h8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTCCAGGTGCTCCAGCCGGCTGGACACTCGCACAATGTCCTCGCTGAGGGCCTGGCT GGACCGCAGCCGCTTGCTCTCCAGCCCTGTCTTCTCCTGCATCAGGGCCTCCTTCTTGGC CAGGATGGCTTCCCGCTTGCGGAGCTCCTCCCCCAGCTCCTCCAGTGCCCGCCGCTGCTG AAGCACCTTCTCCATCTCCTGGTCCAGCCACTTCTTCTGCTCCTCGATCTTCTGTTGCTG CTCCAGGCTGACCACAGAGCCATTGCTGCCACTGCGCCGCTTCCTCTGAAACGCCGCGAT CTCTTCTGTCTTGATCTTCAGGATCTTTTGCTGCTGCTCGTGCTTTAGCTCCAGCTCCTT GACTCGGTGCTGCCGCTTGTTCATCTCTGTCTCCAGGCGCCGCTTCTGCTCCGTCTCCTC TCGAAGCCGCCTCTGCAGCTGCCCCTGCTGCTGCCGCATAAGTTGCACATTCCTCTCAAG CTCCTGCAGCCGCTTCTCACTCTGGGCCGACAGCGACACCAGCCGCTCTGTCACCTGCTT CTTCTCCTTCAGCACCTGCACCTGGCTTTGAGCGGCAGCAACCCTCTTGCGGAATTCCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTCCAGGTGCTCCAGCCGGCTGGACACTCGCACAATGTCCTCGCTGAGGGCCTGGCT GGACCGCAGCCGCTTGCTCTCCAGCCCTGTCTTCTCCTGCATCAGGGCCTCCTTCTTGGC CAGGATGGCTTCCCGCTTGCGGAGCTCCTCCCCCAGCTCCTCCAGTGCCCGCCGCTGCTG AAGCACCTTCTCCATCTCCTGGTCCAGCCACTTCTTCTGCTCCTCGATCTTCTGTTGCTG CTCCAGGCTGACCACAGAGCCATTGCTGCCACTGCGCCGCTTCCTCTGAAACGCCGCGAT CTCTTCTGTCTTGATCTTCAGGATCTTTTGCTGCTGCTCGTGCTTTAGCTCCAGCTCCTT GACTCGGTGCTGCCGCTTGTTCATCTCTGTCTCCAGGCGCCGCTTCTGCTCCGTCTCCTC TCGAAGCCGCCTCTGCAGCTGCCCCTGCTGCTGCCGCATAAGTTGCACATTCCTCTCAAG CTCCTGCAGCCGCTTCTCACTCTGGGCCGACAGCGACACCAGCCGCTCTGTCACCTGCTT CTTCTCCTTCAGCACCTGCACCTGGCTTTGAGCGGCAGCAACCCTCTTGCGGAATTCCTG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 54-234, - strand, RNAz p=0.976162 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 54-234, - strand, RNAz p=0.976162 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 54-234, gnl|bosTau2|chr21 (15580428-15580248) | |
| 54-234, gnl|Hg17|chr15 (87977054-87977234) | |
| 54-234, gnl|Mm7|chr7 (75570401-75570581) | |
| 357-562, gnl|bosTau2|chr21 (15579608-15579403) | |
| 357-562, gnl|canFam2|chr3 (55495623-55495838) | |
| 357-562, gnl|danRer3|chr7 (5987896-5988101) | |
| 357-562, gnl|dasNov1|scaffold_12493 (392-176) | |
| 357-562, gnl|echTel1|scaffold_304174 (17280-17500) | |
| 357-562, gnl|fr1|chrUn (297414624-297414419) | |
| 357-562, gnl|galGal2|chr10 (13418880-13418662) | |
| 357-562, gnl|hg17|chr15 (87977920-87978136) | |
| 357-562, gnl|Hg17|chr15 (87977920-87978126) | |
| 357-562, gnl|loxAfr1|scaffold_37750 (26865-26649) | |
| 357-562, gnl|mm7|chr7 (75571074-75571290) | |
| 357-562, gnl|Mm7|chr7 (75571074-75571280) | |
| 357-562, gnl|monDom2|scaffold_45 (10835787-10835586) | |
| 357-562, gnl|oryCun1|scaffold_196554 (21570-21784) | |
| 357-562, gnl|panTro1|chr16 (88853500-88853716) | |
| 357-562, gnl|rheMac2|chr7 (69266840-69267056) | |
| 357-562, gnl|rn3|chr1 (135555625-135555841) | |
| 357-562, gnl|tetNig1|chr5 (5054976-5054763) | |
| 357-562, gnl|xenTro1|scaffold_130 (897068-896857) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-234, gnl|bosTau2|chr21 (15580428-15580248) | |
| 54-234, gnl|Hg17|chr15 (87977054-87977234) | |
| 54-234, gnl|Mm7|chr7 (75570401-75570581) | |
| 357-562, gnl|bosTau2|chr21 (15579608-15579403) | |
| 357-562, gnl|canFam2|chr3 (55495623-55495838) | |
| 357-562, gnl|danRer3|chr7 (5987896-5988101) | |
| 357-562, gnl|dasNov1|scaffold_12493 (392-176) | |
| 357-562, gnl|echTel1|scaffold_304174 (17280-17500) | |
| 357-562, gnl|fr1|chrUn (297414624-297414419) | |
| 357-562, gnl|galGal2|chr10 (13418880-13418662) | |
| 357-562, gnl|hg17|chr15 (87977920-87978136) | |
| 357-562, gnl|Hg17|chr15 (87977920-87978126) | |
| 357-562, gnl|loxAfr1|scaffold_37750 (26865-26649) | |
| 357-562, gnl|mm7|chr7 (75571074-75571290) | |
| 357-562, gnl|Mm7|chr7 (75571074-75571280) | |
| 357-562, gnl|monDom2|scaffold_45 (10835787-10835586) | |
| 357-562, gnl|oryCun1|scaffold_196554 (21570-21784) | |
| 357-562, gnl|panTro1|chr16 (88853500-88853716) | |
| 357-562, gnl|rheMac2|chr7 (69266840-69267056) | |
| 357-562, gnl|rn3|chr1 (135555625-135555841) | |
| 357-562, gnl|tetNig1|chr5 (5054976-5054763) | |
| 357-562, gnl|xenTro1|scaffold_130 (897068-896857) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| jca (0.11396) |