Ss1.1-rjca31c_k21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGGCGCTGCAGGTGGAGTCCTGTGCTGCCTGCTTCCGGCTCCTCACCGCCTCCGCGAG CTCCCTGGAATCCTTGCAGCCCTGCCGGCATGTCTCAGGCGGAGTTTGAGAAAGCTGCTG AGGAAGTTAAGAACCTTAAGACCAAACCAGCAGATGATGAGATGCTGTTCATCTACAGCC ACTACAAACAAGCGACCGTGGGTGACATAAATACAGAACGGCCTGGAATTTTGGACCTCA AAGGCAAGGCCAAGTGGGATGCCTGGAATGGGCTGAAAGGGACTTCCAAGGAAGATGCCA TGAAAGCGTATATCAACAAAGTAGAAGAACTAAAGAAAAAATATGGAATATAAGGGACTG GATTTGCCTGCCAGCTTTGCAGTTCACCTGACATAATGCCTTGTTTTTCTAATACTGTGG ATGAAGTTAATAAATAACTAGTTAAGCCAGTTGCTCAAGACAGCCCAGGATGTAACGCCA GCAGATTAGGGGCTGAAATGGCTACTAACCCTCGCCGAGTAGTTTTTATCATAGGTCAAT TAAAAGTACATTTGTTACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGGCGCTGCAGGTGGAGTCCTGTGCTGCCTGCTTCCGGCTCCTCACCGCCTCCGCGAG CTCCCTGGAATCCTTGCAGCCCTGCCGGCATGTCTCAGGCGGAGTTTGAGAAAGCTGCTG AGGAAGTTAAGAACCTTAAGACCAAACCAGCAGATGATGAGATGCTGTTCATCTACAGCC ACTACAAACAAGCGACCGTGGGTGACATAAATACAGAACGGCCTGGAATTTTGGACCTCA AAGGCAAGGCCAAGTGGGATGCCTGGAATGGGCTGAAAGGGACTTCCAAGGAAGATGCCA TGAAAGCGTATATCAACAAAGTAGAAGAACTAAAGAAAAAATATGGAATATAAGGGACTG GATTTGCCTGCCAGCTTTGCAGTTCACCTGACATAATGCCTTGTTTTTCTAATACTGTGG ATGAAGTTAATAAATAACTAGTTAAGCCAGTTGCTCAAGACAGCCCAGGATGTAACGCCA GCAGATTAGGGGCTGAAATGGCTACTAACCCTCGCCGAGTAGTTTTTATCATAGGTCAAT TAAAAGTACATTTGTTACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 89-340, gnl|bosTau2|chr19 (16543347-16543096) | |
| 89-340, gnl|canFam2|chr9 (48364401-48364203) | |
| 89-340, gnl|canFam2|chr9 (48364105-48364376) | |
| 89-340, gnl|dasNov1|scaffold_87611 (7007-6836) | |
| 89-340, gnl|dasNov1|scaffold_87611 (6744-7009) | |
| 89-340, gnl|echTel1|scaffold_309268 (871-1068) | |
| 89-340, gnl|echTel1|scaffold_309268 (1166-895) | |
| 89-340, gnl|hg17|chr17 (602869-603041) | |
| 89-340, gnl|Hg17|chr17 (602873-603119) | |
| 89-340, gnl|hg17|chr2 (63257782-63258051) | |
| 89-340, gnl|loxAfr1|scaffold_20973 (39676-39874) | |
| 89-340, gnl|loxAfr1|scaffold_20973 (39972-39701) | |
| 89-340, gnl|mm7|chr11 (76299820-76300018) | |
| 89-340, gnl|mm7|chr11 (76300113-76299845) | |
| 89-340, gnl|Mm7|chr11 (76299845-76300096) | |
| 89-340, gnl|monDom2|scaffold_86 (1748544-1748367) | |
| 89-340, gnl|monDom2|scaffold_86 (1748272-1748540) | |
| 89-340, gnl|oryCun1|scaffold_124961 (3450-3185) | |
| 89-340, gnl|oryCun1|scaffold_179706 (181035-181233) | |
| 89-340, gnl|panTro1|chr12 (65480843-65481112) | |
| 89-340, gnl|panTro1|chr19 (730677-730854) | |
| 89-340, gnl|rheMac2|chr13 (63295776-63296045) | |
| 89-340, gnl|rheMac2|chr16 (543756-543933) | |
| 89-340, gnl|rn3|chr10 (63585517-63585715) | |
| 89-340, gnl|rn3|chr10 (63585811-63585542) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-340, gnl|bosTau2|chr19 (16543347-16543096) | |
| 89-340, gnl|canFam2|chr9 (48364401-48364203) | |
| 89-340, gnl|canFam2|chr9 (48364105-48364376) | |
| 89-340, gnl|dasNov1|scaffold_87611 (7007-6836) | |
| 89-340, gnl|dasNov1|scaffold_87611 (6744-7009) | |
| 89-340, gnl|echTel1|scaffold_309268 (871-1068) | |
| 89-340, gnl|echTel1|scaffold_309268 (1166-895) | |
| 89-340, gnl|hg17|chr17 (602869-603041) | |
| 89-340, gnl|Hg17|chr17 (602873-603119) | |
| 89-340, gnl|hg17|chr2 (63257782-63258051) | |
| 89-340, gnl|loxAfr1|scaffold_20973 (39676-39874) | |
| 89-340, gnl|loxAfr1|scaffold_20973 (39972-39701) | |
| 89-340, gnl|mm7|chr11 (76299820-76300018) | |
| 89-340, gnl|mm7|chr11 (76300113-76299845) | |
| 89-340, gnl|Mm7|chr11 (76299845-76300096) | |
| 89-340, gnl|monDom2|scaffold_86 (1748544-1748367) | |
| 89-340, gnl|monDom2|scaffold_86 (1748272-1748540) | |
| 89-340, gnl|oryCun1|scaffold_124961 (3450-3185) | |
| 89-340, gnl|oryCun1|scaffold_179706 (181035-181233) | |
| 89-340, gnl|panTro1|chr12 (65480843-65481112) | |
| 89-340, gnl|panTro1|chr19 (730677-730854) | |
| 89-340, gnl|rheMac2|chr13 (63295776-63296045) | |
| 89-340, gnl|rheMac2|chr16 (543756-543933) | |
| 89-340, gnl|rn3|chr10 (63585517-63585715) | |
| 89-340, gnl|rn3|chr10 (63585811-63585542) |
| Expressed library(ies): 72 entry(ies) | More info |
| Expressed library(ies): 72 entry(ies) | Help | Less info |
| fat (3.39083) | |
| duo (2.24641) | |
| mcp (2.21843) | |
| csk (1.26671) | |
| hea (1.22699) | |
| cje (1.15664) | |
| spc (1.13366) | |
| ton (1.053) | |
| fbs (1.05208) | |
| med (1.04627) | |
| hyp (0.85702) | |
| eli (0.759071) | |
| nep (0.7357) | |
| cbe (0.717703) | |
| ebs (0.709807) | |
| ill (0.702371) | |
| cut (0.679694) | |
| mas (0.630915) | |
| fli (0.608643) | |
| cly (0.603209) | |
| jej (0.593531) | |
| fce (0.543183) | |
| ssp (0.542079) | |
| fty (0.527519) | |
| fhi (0.508733) | |
| nje (0.49776) | |
| bla (0.497389) | |
| pgl (0.473934) | |
| fco (0.471624) | |
| mgp (0.461361) | |
| cli (0.458435) | |
| lnt (0.426925) | |
| cst (0.420109) | |
| col (0.390016) | |
| kid (0.389206) | |
| sin (0.349895) | |
| rec (0.346141) | |
| vin (0.332557) | |
| csp (0.322373) | |
| mga (0.32041) | |
| isp (0.300752) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| che (0.272628) | |
| ute (0.265569) | |
| sug (0.254582) | |
| ese (0.253004) | |
| eep (0.245128) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| nca (0.136874) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 72 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (3.39083) | |
| duo (2.24641) | |
| mcp (2.21843) | |
| csk (1.26671) | |
| hea (1.22699) | |
| cje (1.15664) | |
| spc (1.13366) | |
| ton (1.053) | |
| fbs (1.05208) | |
| med (1.04627) | |
| hyp (0.85702) | |
| eli (0.759071) | |
| nep (0.7357) | |
| cbe (0.717703) | |
| ebs (0.709807) | |
| ill (0.702371) | |
| cut (0.679694) | |
| mas (0.630915) | |
| fli (0.608643) | |
| cly (0.603209) | |
| jej (0.593531) | |
| fce (0.543183) | |
| ssp (0.542079) | |
| fty (0.527519) | |
| fhi (0.508733) | |
| nje (0.49776) | |
| bla (0.497389) | |
| pgl (0.473934) | |
| fco (0.471624) | |
| mgp (0.461361) | |
| cli (0.458435) | |
| lnt (0.426925) | |
| cst (0.420109) | |
| col (0.390016) | |
| kid (0.389206) | |
| sin (0.349895) | |
| rec (0.346141) | |
| vin (0.332557) | |
| csp (0.322373) | |
| mga (0.32041) | |
| isp (0.300752) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| che (0.272628) | |
| ute (0.265569) | |
| sug (0.254582) | |
| ese (0.253004) | |
| eep (0.245128) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| nca (0.136874) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |